Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1804 ATGGCATATCCCTTCTCAGATTTCAAGTACTCAGATGGCTTTACTGTAGTGGGTATCTCCTTCTGCACAGCTATTGTCTGTGAGGCTATCTCATGGGTTCTTATCTATCGCACCAATTCTTACAAAAACCTTAGGTCCTCCATTGACAAAGCCTCCAAGAAACTTGAGACAATGAAGACAGACAGCAATAAAGTGAACATCAAGAAGTCcaagaccaaaaaaattgatCGTGTTGAGACAAGCCTCAAAGAATCGAGCCGTGACTTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTGGCTTTGGTTCTCTTTGTGGTCTTTGGGTTGCTGAATTCGCTCTTTGAAGGCAAAGTAGTTGCCAAATTGCCCTTCAAACCTTTTGGGCTTATTATGAAGATGAGCCATCGTGGGTTGCAGGGCAATGACCCTACTGATTGTTCCATGGCATTCCTATACTTCTTGTGTTCCATTAGCATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCTCCAAGAGGTGCAAGTGCCGGCCTCTTTCCCATGCCTGATCCAAAGACCAGTTGA 570 0.4351 MAYPFSDFKYSDGFTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNKVNIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLIMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGASAGLFPMPDPKTS 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1804 189 Pfam Integral membrane protein EMC3/TMCO1-like 15 171 IPR002809 GO:0016020
Ssu4g1804 189 PIRSF UCP023322_TM_coiled-coil 3 189 IPR008559 GO:0005262|GO:0030176|GO:0032469
Ssu4g1804 189 Coils Coil 41 61 - -
Ssu4g1804 189 SMART DUF106_2 12 172 IPR002809 GO:0016020
Ssu4g1804 189 PANTHER PNAS-RELATED 4 187 IPR008559 GO:0005262|GO:0030176|GO:0032469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1804 K21891 - gmx:100782593 347.436