Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1801 ATGATCAGAATCAGATCTAACTTACCTGTTTTCTCTGTTATGCTATTACGTATCAGCCATAACTCACTCACTGTTAATCATTGTCATATAGTAGAGCAGCCCCTTATGAGTGCtactttcaatttctttaaCCCTTTGAAGTCTGAAACTATTTTAGTACCACCAAAATTTGGTTTCTCAGTCAGACCCTTTTCTACTTCATCTTCAACCAGAAGCCTTGGGGCGTCACCTGATGCCCCTGCACACGAGGCCTTGAGTGAGGATGATGATAGTGATGATGgggatgatgatgaggatgatgGTGATGGTCATGAcaagaataaagataagaatGGTACCCATTGTAGTCAGTTACATTTAAGGGATGATGGTCTTGCCAAAGAAGTTAAAACCATTTTGGATATAATGCATGAAGTGGATTCTGGGCcatctaaaattaagcagaagCTTGAGCATTGCAGTGTTGTGCTATCATCAGAGCTGGTTGTGGAGGTCCTTTCGAGAACTCGCAATGATTGGGAAGCAGCTTTCACCTTTTTCTTGTGGGCTGGCAAGCAACCAGGGTATGCTCATTCAGTTCGTGAGTACCATTCTATGATCTCTATCCTTGGCAAAATGAGGAAGTTTGATACCGCTTGGACCTTAATTGAGGACATGAGAGGAGGTAGAACTGGTCCATCCCTTGTCACTCCTCAAACACTGTTGATTATGATCAGGAGATACTGTGCTGTACATGATGTTGCAAGAGCTATCAATACTTTCTATGCTTATAAACGGTTTAACTTTCAAGTTGGGCTAGAGGAATTTCAAAGCCTTCTTTCTGCCCTTTGTCGGTATAAGAATGTGCAAGATGCTGAACACTTGCTGTTCTGCAACAAAAATGTATTCCCATTTGACACCAAAAGCTTTAACATCGTTCTGAATGGATGGTGTAATTTGATTGTTAGCACGCATCATGCAGAAAGAATATGGCAGGAGATGAGCAAGAGAGGAATCCAACACGATGTTGTCTCCTATGCAAGTATCATATCTTGCTACTCAAAAACTTCTAAACTTTATAAGGTTCTCAGGATGTTTGACGAgatgaagaaaaggaagatcCCTCCAGATAGGAAGGTTTATAATGCGGTCATTTATGCTCTAGCAAAGAGTAGGCTTGTGAAAGAAGCTACCAATCTCATTGGAACAATGGAAGACAACAACGTTGCTCCAGATGTTGTTACTTACAACTCCCTGATCAGGCCTCTCTGCAAAACCCGCAAAGTTGATGAAGCTAAACAACATTTTGATGAGATGTTGAAGCGGCGCTTATCCCCAACAATTCAAACTTTTCATGCTTTCTTCCGTATATTAAGGACTAAGGAAGAAGTATTTGAGCTTTTGGACAAAATGAAAGTGCTGGGATGCTACCCAGTCACTGAGACTTATATAATGTTGATAAGAAAGTTTTGCCGTTGGCGCCAGCTTGATGATGTATTTAAGTTATGGGATGCAATGAGGGAAGATGGAATCAGCCGTGACCGTAGTTCATACATAGTATTGATTCATGGACTGTTTCTAAATGGAAAGCTAGAGGAAGCATACAGATATTATGCAGAGATGCTTGAGAAAGGCTTCCATCCAGAACCGAAGACAGAAGAAATGCTTCAGGCATGGGTTTCCAGGAAACAGGCAACAGAGGGCCAGGAGCCAGATTTAGAACCTAATCAACTGGAAAATGATACTcttaaaaagaaagtgaaggcCATACCGAGTAAATTTGAGAGGGAAAAAGCTTTTCTTCGCCAACCTGAGACTAGAAGAGTAACAAGAGAACGGGGTTTTTCTTTCTGGGAGCAGTAA 1842 0.3914 MIRIRSNLPVFSVMLLRISHNSLTVNHCHIVEQPLMSATFNFFNPLKSETILVPPKFGFSVRPFSTSSSTRSLGASPDAPAHEALSEDDDSDDGDDDEDDGDGHDKNKDKNGTHCSQLHLRDDGLAKEVKTILDIMHEVDSGPSKIKQKLEHCSVVLSSELVVEVLSRTRNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWTLIEDMRGGRTGPSLVTPQTLLIMIRRYCAVHDVARAINTFYAYKRFNFQVGLEEFQSLLSALCRYKNVQDAEHLLFCNKNVFPFDTKSFNIVLNGWCNLIVSTHHAERIWQEMSKRGIQHDVVSYASIISCYSKTSKLYKVLRMFDEMKKRKIPPDRKVYNAVIYALAKSRLVKEATNLIGTMEDNNVAPDVVTYNSLIRPLCKTRKVDEAKQHFDEMLKRRLSPTIQTFHAFFRILRTKEEVFELLDKMKVLGCYPVTETYIMLIRKFCRWRQLDDVFKLWDAMREDGISRDRSSYIVLIHGLFLNGKLEEAYRYYAEMLEKGFHPEPKTEEMLQAWVSRKQATEGQEPDLEPNQLENDTLKKKVKAIPSKFEREKAFLRQPETRRVTRERGFSFWEQ 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1801 613 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 50 603 - -
Ssu4g1801 613 Pfam PPR repeat family 404 448 IPR002885 -
Ssu4g1801 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Ssu4g1801 613 Gene3D Tetratricopeptide repeat domain 455 565 IPR011990 GO:0005515
Ssu4g1801 613 PANTHER OS01G0816000 PROTEIN 50 603 - -
Ssu4g1801 613 MobiDBLite consensus disorder prediction 85 100 - -
Ssu4g1801 613 TIGRFAM PPR: pentatricopeptide repeat domain 510 541 IPR002885 -
Ssu4g1801 613 TIGRFAM PPR: pentatricopeptide repeat domain 337 370 IPR002885 -
Ssu4g1801 613 TIGRFAM PPR: pentatricopeptide repeat domain 373 406 IPR002885 -
Ssu4g1801 613 TIGRFAM PPR: pentatricopeptide repeat domain 475 507 IPR002885 -
Ssu4g1801 613 TIGRFAM PPR: pentatricopeptide repeat domain 196 220 IPR002885 -
Ssu4g1801 613 TIGRFAM PPR: pentatricopeptide repeat domain 407 440 IPR002885 -
Ssu4g1801 613 MobiDBLite consensus disorder prediction 101 116 - -
Ssu4g1801 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 507 541 IPR002885 -
Ssu4g1801 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Ssu4g1801 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Ssu4g1801 613 Pfam PPR repeat 196 220 IPR002885 -
Ssu4g1801 613 Pfam PPR repeat 475 504 IPR002885 -
Ssu4g1801 613 Pfam PPR repeat 510 539 IPR002885 -
Ssu4g1801 613 Gene3D Tetratricopeptide repeat domain 126 291 IPR011990 GO:0005515
Ssu4g1801 613 Gene3D Tetratricopeptide repeat domain 292 454 IPR011990 GO:0005515
Ssu4g1801 613 MobiDBLite consensus disorder prediction 67 116 - -
Ssu4g1801 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 334 IPR002885 -
Ssu4g1801 613 Pfam Pentatricopeptide repeat domain 322 381 IPR002885 -
Ssu4g1801 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1801 185 563 Glycosyltransferase AT1G05670 27.062 2.70e-33 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1801 - - gmx:100785546 1028.47