Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1789 ATGGCTGCTCCTCCACAATCTGAATCCCAATCTCTACCGCTCCAAGACCGAGTCGCAATCGTCACCGGCTCGTCCCGCGGAATCGGTCGAGAAATCGCGCTTCACTTGGCTTCACTCGGCGCGCGAATCGTCGTCAACTACACCTCCAACTCGGCCCAGGCCCACTCAGTCGCGGCCCAAATCAACGCCGACTCCGCTAGGCCGCGCGCCGTCGTGGTCCAAGCCGACGTGTCCGACGCGGCCCAGGTGAAGTCCCTCTTCGACTCGGCCGAGCGCGCCTTCGACTCGCCGGTCCACGTCCTGGTGAACTCGGCCGGCGTCCTCGACGGCACGTACTCCTCCGTCGCCAACACCACCGCGGAGTCCTTCGACAGCACCTTCGCGGTGAACGCGCGGGGCGCGTTCTTGTGCGCCAGGGAGGCGGCGAACCGGTTGAAGCGCGGCGGCGGGGGGCGGATCATCCTGCTGACGACGTCGCAGGTGGCGGCGCTGAGGCCCGGATTCGCCGCGTACGCGGCGTCGAAGGCGGCGGTGGAGGCGATGGTGAAGATCATGGCGAAGGAGCTAAGGGGAACGCAGATCACGGCGAACTGCGTGGCGCCGGGACCCATCGCGACGGAGATGTTCTTCGAGGGGAAGACGGAGGAGACGGTGAATAGGGTGGTGCAAGAGAGTCCCATGGGTAGGCTGGGTGAGACCAAGGATGTGGCACCCGTTGTGGGATTCTTGGCCACTGATGATGCTGAATGGGTCAACGGTCAAATCATTCGTGTCAATGGTGGCTATGTTTAG 792 0.6427 MAAPPQSESQSLPLQDRVAIVTGSSRGIGREIALHLASLGARIVVNYTSNSAQAHSVAAQINADSARPRAVVVQADVSDAAQVKSLFDSAERAFDSPVHVLVNSAGVLDGTYSSVANTTAESFDSTFAVNARGAFLCAREAANRLKRGGGGRIILLTTSQVAALRPGFAAYAASKAAVEAMVKIMAKELRGTQITANCVAPGPIATEMFFEGKTEETVNRVVQESPMGRLGETKDVAPVVGFLATDDAEWVNGQIIRVNGGYV 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1789 263 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1 263 - -
Ssu4g1789 263 Gene3D - 2 262 - -
Ssu4g1789 263 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 17 207 - -
Ssu4g1789 263 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 96 107 IPR002347 -
Ssu4g1789 263 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 190 IPR002347 -
Ssu4g1789 263 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 262 IPR036291 -
Ssu4g1789 263 Pfam Enoyl-(Acyl carrier protein) reductase 23 262 - -
Ssu4g1789 263 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Ssu4g1789 263 PRINTS Glucose/ribitol dehydrogenase family signature 171 190 IPR002347 -
Ssu4g1789 263 PRINTS Glucose/ribitol dehydrogenase family signature 145 161 IPR002347 -
Ssu4g1789 263 PRINTS Glucose/ribitol dehydrogenase family signature 192 209 IPR002347 -
Ssu4g1789 263 PRINTS Glucose/ribitol dehydrogenase family signature 96 107 IPR002347 -
Ssu4g1789 263 PRINTS Glucose/ribitol dehydrogenase family signature 226 246 IPR002347 -
Ssu4g1789 263 PANTHER NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED 1 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1789 Ssu-Chr4 32151420 32152211 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1789 18 261 Acyl Lipid Metabolism Gene Families AT1G24360 33.061 1.50e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1789 K00059 - gmx:100809416 428.713