Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1779 ATGCATGCATGTGAGGGAGATGCAGTGACGAAGCTTACCAATGAGAAAATTCCCTTTTTTAATGCTCCTATATATCTGAAGAACATGACTCAGATTGGGAAAGTTGATGAAATATTTGGCCCCATCAATGAAGCTTACTTCTCAATTAAAATGATGGAAGGGATTGTTGCTACTTCTTATTCAGCCGGCGACAAGTTTTATATTGATCCAAGGAAACTGTTGCCTCTTGCAAGATTTCTTCCACAACCGAAGGGACAACCACAAGCTGCTAGAGGCGGCGGTGGAGGAGGTCGCGTTGGAGGCAGAGGTGGCCGTGGAGGTGGTGGCTTTCGTGGCCGGGGCGGCCCAAGGGGTGGGAGATTTGGTCCTCCCAGGGGTGGTGGACGGGGTGGTGGTTTCAGGGGAAGGGGGAGATCATAG 420 0.5024 MHACEGDAVTKLTNEKIPFFNAPIYLKNMTQIGKVDEIFGPINEAYFSIKMMEGIVATSYSAGDKFYIDPRKLLPLARFLPQPKGQPQAARGGGGGGRVGGRGGRGGGGFRGRGGPRGGRFGPPRGGGRGGGFRGRGRS 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1779 139 Pfam Gar1/Naf1 RNA binding region 1 80 IPR007504 GO:0001522|GO:0042254
Ssu4g1779 139 SUPERFAMILY Translation proteins 1 69 IPR009000 -
Ssu4g1779 139 Gene3D Probable tRNA pseudouridine synthase domain 1 81 IPR038664 -
Ssu4g1779 139 MobiDBLite consensus disorder prediction 82 139 - -
Ssu4g1779 139 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 1 139 - -
Ssu4g1779 139 PANTHER NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1 1 139 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1779 K11128 - gmx:100799823 177.178