Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1778 ATGAATGCACTAGTAGCCACCAACAGGAACTTCAAGTTGGCCTCTAGGCTTCTGGGATTGGATTCAAAGCTTGAGAAAAGTTTACTGATTCCATTCAGGGAAATCAAGGTTGAATGTACCATACCTAAAGATGATGGCACGTTGCAATCTTACGTTGGGTTCAGGATTCAACATGATAATGCCAGAGGCCCTATGAAAGGAGGAATCAGATACCATCCTGAGGTTGACCCAGATGAAGTGAATGCTTTAGCACAACTAATGACATGGAAAACAGCTGTAGCAAATATACCATATGGTGGTGCCAAAGGAGGGATAGGGTGTAACCCAGCAGACTTAAGTCAGTCTGAGTTAGAAAGACTTACCAGAGTTTTTACCCAGAAAATTCATGATCTGATTGGAACTCACACTGATGTGCCAGCACCTGATATGGGAACAGGACCACAGACTATGGCATGGATACTAGATGAGTATTCCAAATTTCATGGTTACTCTCCTGCAGTAGTGACTGGAAAACCTATAGATCTTGGTGGATCTCTAGGTAGAGATGCGGCTACAGGACGAGGAGTCCTCTTTGCAACAGAGGCTTTGCTTAATGAGCATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTGAGAAAGGTGGAAAAGTTGTTGCTGTGAGTGACATAACTGGAGCCATAAAGAACAGCCAAGGTCTTGACATCCCAAGCCTACTCAAGCATTCCAAAGAGCACCGGGGAGTAAAAGGATTCCATGGTGGTGATCCAATTGACCCTAGCTCAATATTGGTTGAAGATTGTGATGTTCTAGTCCCAGCAGCTCTTGGGGGTGTCATCAATAGGGAAAATGCAAATGAAATCAAGGCCAATTTTATTGTGGAAGCAGCTAATCACCCAACTGACCCGGAGGCTGATGAGATTCTGAAGAAGAAAGGCGTTGTGATCCTCCCAGACATATATGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCaggGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAGACCTACATGACCAAAGGTTTCAAAGATGTGAAGGACATGTGCAAAACCCATGAATGTGATCTTCGTATGGGAGCCTTCACGCTGGCAGTTAATCGTGTAGCACGTGCCACTGTCCTTAGGGGTTGGGAAGCTTGA 1227 0.4458 MNALVATNRNFKLASRLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLQSYVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPADLSQSELERLTRVFTQKIHDLIGTHTDVPAPDMGTGPQTMAWILDEYSKFHGYSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKSVSGQRFVIQGFGNVGSWAAQLISEKGGKVVAVSDITGAIKNSQGLDIPSLLKHSKEHRGVKGFHGGDPIDPSSILVEDCDVLVPAALGGVINRENANEIKANFIVEAANHPTDPEADEILKKKGVVILPDIYANSGGVTVSYFEWVQGFMWDEEKVNNELKTYMTKGFKDVKDMCKTHECDLRMGAFTLAVNRVARATVLRGWEA 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1778 408 PANTHER BNAA05G37230D PROTEIN 1 402 - -
Ssu4g1778 408 Gene3D Leucine Dehydrogenase, chain A, domain 1 33 175 - -
Ssu4g1778 408 SMART ELFV_dehydrog_3 178 405 IPR006096 GO:0006520|GO:0016491
Ssu4g1778 408 ProSitePatterns Glu / Leu / Phe / Val dehydrogenases active site. 96 109 IPR033524 -
Ssu4g1778 408 PANTHER GLUTAMATE DEHYDROGENASE 1 402 - -
Ssu4g1778 408 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 6 178 IPR046346 -
Ssu4g1778 408 Pfam Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 176 405 IPR006096 GO:0006520|GO:0016491
Ssu4g1778 408 CDD NAD_bind_1_Glu_DH 176 399 IPR033922 GO:0016639
Ssu4g1778 408 Pfam Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 33 159 IPR006097 GO:0006520|GO:0016491
Ssu4g1778 408 PIRSF Glu_DH 1 408 IPR014362 GO:0016639
Ssu4g1778 408 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 176 406 IPR036291 -
Ssu4g1778 408 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 167 189 IPR006095 GO:0006520|GO:0016491
Ssu4g1778 408 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 209 229 IPR006095 GO:0006520|GO:0016491
Ssu4g1778 408 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 88 102 IPR006095 GO:0006520|GO:0016491
Ssu4g1778 408 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 336 347 IPR006095 GO:0006520|GO:0016491
Ssu4g1778 408 Gene3D - 176 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1778 Ssu-Chr4 31999979 32004157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1778 1 296 EF-hand Containing Proteins AT5G07440 79.730 9.61e-180 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1778 K00261 - gmx:100789509 795.808