Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1776 ATGCAATCGCACCTTCTGGTGGGACCCATCTCCGTCTCGCGCTATGGTGGCGCCGCCGATTCCGGCGCCTTCCACTCCTCCGCGTCCTCCGCCTGGACGAGCCCTCCTCGCCGGCGGTCCCCACTCGTCGTGGCCTCCTCGTCGCCCGCCGCCGTCAACGGCGGCCAGAACCACTACGCCGTGCTCGGCGTCGCCCGCACTGCCACCACCGTCGAGATCAAACGCGCTTATCGACTCCTCGCCCGCGAGTATCATCCTGATGTTAGCAAGGATCCGCTGGCTGCTGAATTGTTCAAGAGCATCCATCATGCATATGAAGTACTATCTAATGAAGCAACGAGAGTTCAGTATGATCAAGAGCTTCAATTCGGTCGCAAGCCTTGCAGGGAAAAATGGGGTTACAGCACTGAATTTGAAGATCAGGTAAGAGTCTATAGGTGGGCCCACATGAGGAAAAAAATGCAGAGTGAAAGATGCTGGGAGCATTACAATGTCAATGAGGGCTACTACACCAGTGAAACAGATGaggaagaagatgaaggaaATGTAGATGAAGAGAGGGGTTCTTTTATTGAAGTGCTTAGATCAGCATTCatgtcattatttttgtttcagaCGTTTGGATCCAGACTCTCACTCACATTTAGCAGCCTGACAGCATTGTTTGATAAGAAGTTAGACACCGGCTATAAAATTGGCTATGTAATAGCATGGATTTTGGGTGGGAGGGGTGGCATATTGCTAACATTGTGCTTGTCATTTGCAAGTTGGGTTTGCGGGAAAACCAGTAGTAGCGTTGTTGCACTAGTTGTGGTGGCCATGTGGGTTGGCTCCTACCTTGCAAGGTACGCACCACTTCCTCAAGGTGCTCTATTAGCGCTTCTCTACATGTCCATTAAGCTACAATCTGACCTAATATGA 921 0.4929 MQSHLLVGPISVSRYGGAADSGAFHSSASSAWTSPPRRRSPLVVASSSPAAVNGGQNHYAVLGVARTATTVEIKRAYRLLAREYHPDVSKDPLAAELFKSIHHAYEVLSNEATRVQYDQELQFGRKPCREKWGYSTEFEDQVRVYRWAHMRKKMQSERCWEHYNVNEGYYTSETDEEEDEGNVDEERGSFIEVLRSAFMSLFLFQTFGSRLSLTFSSLTALFDKKLDTGYKIGYVIAWILGGRGGILLTLCLSFASWVCGKTSSSVVALVVVAMWVGSYLARYAPLPQGALLALLYMSIKLQSDLI 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1776 306 SUPERFAMILY Chaperone J-domain 56 130 IPR036869 -
Ssu4g1776 306 Gene3D DnaJ domain 55 163 IPR036869 -
Ssu4g1776 306 ProSiteProfiles dnaJ domain profile. 57 121 IPR001623 -
Ssu4g1776 306 SMART dnaj_3 56 113 IPR001623 -
Ssu4g1776 306 Pfam DnaJ domain 57 118 IPR001623 -
Ssu4g1776 306 CDD DnaJ 57 110 IPR001623 -
Ssu4g1776 306 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 26 292 - -
Ssu4g1776 306 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 26 292 - -
Ssu4g1776 306 ProSitePatterns Nt-dnaJ domain signature. 98 117 IPR018253 -
Ssu4g1776 306 PRINTS DnaJ domain signature 93 113 IPR001623 -
Ssu4g1776 306 PRINTS DnaJ domain signature 59 77 IPR001623 -
Ssu4g1776 306 PRINTS DnaJ domain signature 77 92 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1776 Ssu-Chr4 31946621 31949201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1776 57 122 Miscellaneous Gene Families AT1G79030 42.029 1.25e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1776 - - gmx:100791619 454.136