Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1768 ATGGCGAGCGATCCGAGCCAGAGCCAGGCCCAAGTGGCGCTAATCCTGGGCCCGGATTCGACCCACCTGGAATCCCTAATCACCCACCTGATGTCCTCCTCCAACTGGCAGCGCTCCCAGGCGGAGTCCCTCTTCAACCTCTGCAAGCAGGCCCACCCGGACTCCCTCCTGTTGGGCCTGGCCCACCTCCTCCACTCCTCCCCGAACCCCGAAACCCGCACCATGTCCGCCATCCTCCTCCGCCGCCACCTCACGCGCCACCACGACTCGTTCCTCTGGCCCCTCCTCTCCCCCGCGGCGCGCTCCTCCCTCCACTCCCTCCTCCTCTCCTCCCTCCACAAGGAGCCCCTCAAATCCATCGCCAAGAAGCTCTGCGACACCGTCGCAGAGCTCGCCGCCGCCACCCTGCCCGACGACGAAGCCGCCTGGCCCGACCTCCTCCCGCTCCTCTTCCAGTGGGTCACCTCCCCCGACGCGAGGCTCCAGGAAATCTCGCTCCTCATATTCGGACAATTGGCGCACTACATCGGCCAAACCCTACTCCCTCAATTGTCCACCCTCCACTCCGTCTTCCTCCGCTGCCTCCACTCGTCCGCCCCCTCCGACGTCCAAATCGCCGCCCTCGCCGCCAGTATCAACTTCGTCCAGTGCCTCTCCAGTCCCTCGGACAGGGACAGGTTCCAGGACCTGCTCCCTCTCATGATGCAGACGCTCACCGAGGCGCTGAACTCCGGCCAGGAGGCCGTGGCGCAGGAGGCGCTCGAGCTCCTCATCGAGCTCGCCGGCACCGAGCCGCGGTTCCTCCGGCGCCAGATCGTGGACGTCATCGGCTCCATGCTGCAGGTCGCGGAAGCCGATGCGCTGGAGGAAGGGACGCGGCACCTGGCGATTGAGTTTGTGGTCACGCTCGCCGAGGCCAGGGAGCGCGCCCCTGGGATGATGAGGAAGCTGCCGCAGTTTGTGAGGAAGCTGGTTGGCGTGTTGATGAATTTGTTGCTGGATATCGAGGACGATCCCGCGTGGCACGGTGCCGAGGACGAGGACGAGGACGCGGGCGAGACGAGTAACTACGGGTTTGGGCAGGAGTGTTTGGATAGGCTCTCCATTTCGTTGGGCGGGAACACTATTGTGCCCGTTGCGTCCGAGTTGTTGCCGACTTACCTGGCTGCTCCTGAGTGGGAAAAGCACCATGCTGCGCTCGTTGCACTTGCGCAAATTGCGGAGGGTTGTTCAAAGGTGATGATAAAGAATCTGGAGCAGGTATTGTCGATGATTTTAAATTCGTTTCGCGATCCCCACCCTCGAGTGCGGTGGGCAGCTATAAATGCAATTGGGCAATTGTCCACAGATTTGGGGCCAGACTTGCAGGTTAAATATCACCACTTAGTGCTGCCGGCTTTGGCTGGAGCCATGGATGATTTTCAAAATCCAAGAGTACAGGCTCATGCTGCTTCGGCAGTGCTAAATTTCACTGAGAATTGTACCCCAGATATTCTAACACCTTACTTAGATGGGATTGTGAGCAAACTTTTGGTACTCCTGCAGAATGGGAAGCAAATGGTTCAAGAAGGGGCTTTGACAGCTTTAGCGTCAGTTGCAGATTCTTCACAGGAGCAATTTCAGAAGTATTATGATGCTGTGATGCCATACTTAAAAGCTATTCTGGTGAATGCAAATGATAAATCTAATCGTATGCTTCGAGCCAAAGCAATGGAGTGCATTAGTTTGGTAGGAATGGCTGTTGGAAAGGAAAAGTTCAGGGATGACGCCAAACAGgTCATGGATGTCTTGATGTCACTACAACAATCTCAACTGGATGCCGATGATCCAACTGCAAGTTACATGTTACAAGCATGGGCACGGCTTTGCAAGTGCCTTGGGCAGGATTTTCTCCCATATATGGGTTTTGTGATGCCTCCTTTGCTCCAGTCTGCACAACTTAAGCCTGATGTGACCATTACATCAGCGGATTCTGATACTGaatttgatgaagatgatgacaGCATTGAAACAATCACACTTGGGGATAAAAGGATAGGCATTAAGACTAGTGTCTTAGAGGAGAAGGCTACTGCTTGTAACATGCTATGTTGCTATGCTGATGAGTTGAAGGAAGGATTTTTTCCTTGGATTGATCagGTTGCTTTCACATTGGTTCCTCTTCTTAAATTTTACTTCCATGAAGAAGTTAGGAAAGCAGCAGTTTCAGCCATGCCGGAACTGTTGTCCTCAGCAAAATCAGCTGTAGAGAAGGGACAATCGCAAGGTCGTGATGAGACTTACGTAAAACAGTTGTCTGATTATATAATACCAAATTTGGTGGAAGCTCTACACAAGGAGCCAGAAGTAGAAATTTGTGCAAGCATGTTGGATGCGTTGAATGAATGCATACAGGTCTCTGGACCACATCTAGATGAAAAGCAAGTACGGAGCATTGTTGATGAGATTAAACAAGTCCTTACGGCCAGTTCATCAAGAAAACATGAAAGAGCAGAGAGGGCCAAAGAAGAGGACTTTGATGCTGAAGAAAGAGAACTACTCAAGGAAGAAAATGAGCAAGAGGAGGAACTTTTTGATCAAATTGGTGATTGCTTGGGGACTTTGATAAAAACATTCAGGGCATCTTTCTTGCCTTTCTTTGATGAGCTGTCCTCATACCTAATTCCTATGTTTGGTAAAGATAAAGCCTCAGAGGAAAGGAGAATAGCCATTTGTATATTTGATGATGTTGCTGAGCACTGTCGTGAAGCCGCTCTTAAATATTATGATTCTTACCTTCCATTCTTACTTGAAGCTTGCAATGATGAATATCCAGATGTTCGACAGGCTGCTGTTTATGGTGTTGGTGTTTGTGCTGAGTTTGGTGGATCTGTTTTCAAACCCCTTGCTGGAGAGGCACTTTCAAGGTTAGATGCTGTGATAAGGCATCCAAATGCACTACATTCTGATAACGTAATGGCATATGACAATGCCGTTTCAGCTCTTGGGAAAATATGCCAGTTCCACCGTGATAGCATAAATGCAACACAGGTTGTTCCTGCCTGGCTAAGTTGCTTGCCTATAAAAGGTGATTTGATTGAGGCCAAGGTTGTGCATGACCAACTATGTTCAATGGTTGAAAGATCTGATAGAGAACTTATAGGTCCTAACAATCAATATCTTCCCAAAATTGTTGCAGTTTTTGCCGAGATTTTATGTGCGGGAAATGATCTGGCAACTGAACAAACTGTGAGTCGGATGATTAATTTATTGAGGCAGCTTCAACAGACTCTGCCACCTTCGACCCTTGCCTCAACCTGGTCATCCTTGCAGCCTCAGCAGCAGCTTGCACTTCGGTCCATCCTATCATCCTAG 3354 0.5051 MASDPSQSQAQVALILGPDSTHLESLITHLMSSSNWQRSQAESLFNLCKQAHPDSLLLGLAHLLHSSPNPETRTMSAILLRRHLTRHHDSFLWPLLSPAARSSLHSLLLSSLHKEPLKSIAKKLCDTVAELAAATLPDDEAAWPDLLPLLFQWVTSPDARLQEISLLIFGQLAHYIGQTLLPQLSTLHSVFLRCLHSSAPSDVQIAALAASINFVQCLSSPSDRDRFQDLLPLMMQTLTEALNSGQEAVAQEALELLIELAGTEPRFLRRQIVDVIGSMLQVAEADALEEGTRHLAIEFVVTLAEARERAPGMMRKLPQFVRKLVGVLMNLLLDIEDDPAWHGAEDEDEDAGETSNYGFGQECLDRLSISLGGNTIVPVASELLPTYLAAPEWEKHHAALVALAQIAEGCSKVMIKNLEQVLSMILNSFRDPHPRVRWAAINAIGQLSTDLGPDLQVKYHHLVLPALAGAMDDFQNPRVQAHAASAVLNFTENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEQFQKYYDAVMPYLKAILVNANDKSNRMLRAKAMECISLVGMAVGKEKFRDDAKQVMDVLMSLQQSQLDADDPTASYMLQAWARLCKCLGQDFLPYMGFVMPPLLQSAQLKPDVTITSADSDTEFDEDDDSIETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAFTLVPLLKFYFHEEVRKAAVSAMPELLSSAKSAVEKGQSQGRDETYVKQLSDYIIPNLVEALHKEPEVEICASMLDALNECIQVSGPHLDEKQVRSIVDEIKQVLTASSSRKHERAERAKEEDFDAEERELLKEENEQEEELFDQIGDCLGTLIKTFRASFLPFFDELSSYLIPMFGKDKASEERRIAICIFDDVAEHCREAALKYYDSYLPFLLEACNDEYPDVRQAAVYGVGVCAEFGGSVFKPLAGEALSRLDAVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSINATQVVPAWLSCLPIKGDLIEAKVVHDQLCSMVERSDRELIGPNNQYLPKIVAVFAEILCAGNDLATEQTVSRMINLLRQLQQTLPPSTLASTWSSLQPQQQLALRSILSS 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1768 1117 Pfam HEAT repeats 387 486 - -
Ssu4g1768 1117 SUPERFAMILY ARM repeat 22 956 IPR016024 -
Ssu4g1768 1117 Gene3D - 19 1116 IPR011989 -
Ssu4g1768 1117 Coils Coil 832 856 - -
Ssu4g1768 1117 Pfam Importin repeat 287 378 IPR041653 -
Ssu4g1768 1117 Pfam HEAT repeat 926 953 IPR000357 GO:0005515
Ssu4g1768 1117 PANTHER BNAC09G37860D PROTEIN 14 1116 - -
Ssu4g1768 1117 PANTHER IMPORTIN BETA 14 1116 IPR040122 GO:0006606
Ssu4g1768 1117 ProSiteProfiles HEAT repeat profile. 421 459 IPR021133 -
Ssu4g1768 1117 Pfam Importin repeat 6 786 887 IPR041389 -
Ssu4g1768 1117 Pfam Interferon-related developmental regulator (IFRD) 490 626 IPR007701 -
Ssu4g1768 1117 SMART TOG_3 370 611 IPR034085 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1768 Ssu-Chr4 31798025 31812199 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1768 K20222 - gmx:100797431 1984.15