Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1757 ATGGATCTGGAGGACATGGCTAAAATCTCCATCTTGTTGGTGGGGCTTTGGCTTCTAGCTAGCTGGGCAGGGTTGTTGGATGTACAATACATGAAGTACAAGGACCCTAAACAGTCAATCGATACTCGGGTTGAGGATCTTATCAAACGGATGACTCTTGAGGAGAAAATTGGCCAAATGTTGCAGATTGAGCGCAAGTATGCATCTGCTGATTTGCTTAAGAAGTATTTCATTGGGAGTGTAATGAGTGAGGGAGGGAGTATTCCAGATCCACAGGCTTCTGCTGAAGCCTGGATCGACATGGTGAATGAATTTCAGAAGGGTGCCTTATCAACCCGGCTTGGAATTCCGATGTTTTATGGGATTGATGCTGTTCATGGCCACAACACTGTTTACAACGCAACTATTTTTCCTCACAATATTGGTCTTGGAGCTACCAGGGACCCTGAACTAGTTAAGAGAATTGGAGCTGCAACTGCCCTTGAAGTTAGAGCAACAGGAATTCAATATGTTTATGCTCCTTGTATAGCAGTCTGTAGAGATCCAAGATGGGGTCGGTGTTATGAAAGCTACAGTGAAGATCCTAAACTAGTTCAAGCTATGACTGAAATCATACCAGGATTGCAAGGGGACATCCCCAATAATCTACCAAAGGGTGTCCCTTTTATCAGTGGaaaAGAAAAAGTTATAGGTTGTGCTAAGCACTACGTGGGTGATGGCGGAACAATCAACGGGATTGATGAGCACAACACTGTCATAGATAGAaatgaattgatgaaaattCACATGCCAGGCTACTTCAGCTCAATCAGCAAGGGTGTGGCAACCATTATGGTCTCTTACTCCAGTTGGAATGGAGTTAAAATGCATGCTCACCATGATCTTATTACTGGGTTCCTCAAGAATACTCTCCATTTCAagGGATTTGTCATTTCAGATTTTGAGGGTCTTGATAGGATCACCTCTCCACCTCGTACAAACATCACTTATTCAATTGAAGCAGGAGTTTCTGCTGGCATTGACATGTTCATGGTTCCAAAGCATTACACAGAATTCATAGATGATCTAACCATGTTGGTGAAAAATAAGTACATTCCCATGAGTCGAATTGATGATGCGGTGAGAAGAATTTTGTGGGTTAAGTTCGTGATGGGTATTTTTGAGAACCCTTTTGCTGATTACAGTTTGGTCAAATATTTGGGAAACCAGGTTAACTGTTTTGTTTTCCTCAAGTATTTCCTTATCTAA 1248 0.4167 MDLEDMAKISILLVGLWLLASWAGLLDVQYMKYKDPKQSIDTRVEDLIKRMTLEEKIGQMLQIERKYASADLLKKYFIGSVMSEGGSIPDPQASAEAWIDMVNEFQKGALSTRLGIPMFYGIDAVHGHNTVYNATIFPHNIGLGATRDPELVKRIGAATALEVRATGIQYVYAPCIAVCRDPRWGRCYESYSEDPKLVQAMTEIIPGLQGDIPNNLPKGVPFISGKEKVIGCAKHYVGDGGTINGIDEHNTVIDRNELMKIHMPGYFSSISKGVATIMVSYSSWNGVKMHAHHDLITGFLKNTLHFKGFVISDFEGLDRITSPPRTNITYSIEAGVSAGIDMFMVPKHYTEFIDDLTMLVKNKYIPMSRIDDAVRRILWVKFVMGIFENPFADYSLVKYLGNQVNCFVFLKYFLI 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1757 415 Pfam Glycosyl hydrolase family 3 N terminal domain 52 378 IPR001764 GO:0004553|GO:0005975
Ssu4g1757 415 PANTHER BETA-D-GLUCOSIDE GLUCOHYDROLASE 10 404 - -
Ssu4g1757 415 Gene3D - 26 401 IPR036962 GO:0004553|GO:0005975
Ssu4g1757 415 PANTHER PERIPLASMIC BETA-GLUCOSIDASE-RELATED 10 404 - -
Ssu4g1757 415 PRINTS Glycosyl hydrolase family 3 signature 299 317 IPR001764 GO:0004553|GO:0005975
Ssu4g1757 415 PRINTS Glycosyl hydrolase family 3 signature 229 245 IPR001764 GO:0004553|GO:0005975
Ssu4g1757 415 PRINTS Glycosyl hydrolase family 3 signature 113 129 IPR001764 GO:0004553|GO:0005975
Ssu4g1757 415 PRINTS Glycosyl hydrolase family 3 signature 137 156 IPR001764 GO:0004553|GO:0005975
Ssu4g1757 415 PRINTS Glycosyl hydrolase family 3 signature 183 199 IPR001764 GO:0004553|GO:0005975
Ssu4g1757 415 SUPERFAMILY (Trans)glycosidases 30 403 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1757 Ssu-Chr4 31657563 31660217 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1757 6 403 Glycoside Hydrolase AT5G20950 65.578 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1757 K05349 - gmx:100816705 751.895