Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1755 ATGGAAGTAGCTGTTTCCCCTCAAGTACAAAAGCTGAATTTGCAGACAACAGGTCGCAAAATTTTATATGCTGGATCCCAGAAGGAGCTGTGGCTTGTTGTGCGTGAAGGATCTCTAAATGATGTAGAGGTGGCCTTGGCATCGTTGAAGAAGAGTGGGGGCAATATCAATTTGAGGAACACCTTTGGGTTGACTCTTCTTCATATTGCAACTTGGAGAAACCACATTCCCATTGTAAGGAGGCTTCTCGCCGCCGGTGCAGATCCTGATGCCCGAGATGGAGAATCAGGATGGAGTAGCCTTCACAGGGCTTTGCATTTTGGTCATCTTGCCGTGGCTAGCGTCCTTCTTCAGCATGGTGCCTCTATTACATTGGAGGACTCGAAATCTCGAATACCTGTAGATCTCTTATCTGGCTCTGTATTTCAGGTTCTTGGAAATGAACACAGTTCAGTGGCTACCGAGGTCTTTAGTTGGGGCAGTGGTGCAAATTATCAGCTTGGGACTGGAAATGCGCATATTCAGAAGTTACCATGCAAAGTTGATTCACTTGGTGGTTCATTCATAAAGTTAATTTCTGCGGGGAAGTTCCATAGTGTGGCACTTACTGCTCGTGGAGAAGTGTATACTTGGGGATTTGGAAGGGGTGGCCGTCTAGGGCATCCTGATTTTGATATACACAGTGGTCAAGCTGCTGTCATCACTCCCCGCCAGGTGATTTCTGGTCTGGGTTCCCGCAGAGTGATGGCAATTGCTGCAGCTAAGCATCATACGGTTGTTGCTACTCAGGGTGGGGAAGTGTTCACTTGGGGATCCAATAGAGAGGGACAGCTTGGGTACCCTTCTGTTGATACACAACCCACACCTCGTAGAGTTTCTTCTTTGAGGTCAAAAATTGTTGCTGTTGCTGCAGCAAACAAACACACGGCTGTAGTTTCTGATTTAGGTGAAGTTTTTACTTGGGGTTGCAACCGAGAGGGTCAGCTTGGTTATGGTACCTCAAACTCAGCATCTAATTACACCCCACATGTGGTTGAATCCTTGAAGGGAAAGACATTGACCAGAGTTTCTGCTGCAAAATATCACACTATTGTATTAGGATCTGATGGAGAGGTATTTACCTGGGGTCATCGACTTGTTACTCCAAAACGTGTAGTAGTTAGTAGGAACTTAAAGAAAAGTGGAAGCACTCCTTTAAAATTTCACCGCAAGGAAAGGCTTAATGTGGTTTCTATAGCTGCTGGAATGGTACACAGCATGGCTCTTACAGATGATGGTGCATTATTTTATTGGGTCTCCTCAGATCCTGATCTTAGATGCCAACAGttATATGCTATGTGCGGAAGAAATATGGTGAGCATATCAGCTGGAAAGTACTGGACTGCAGCAGTTACAGCTACAGGTGATGTTTACATGTGGGATGGGAAGAAAGGTAAGGATAAGCCCCTTGTTGCAACTCGGTTGCATGGTGTAAAGAAGGCTACATCAGTTTCCGTTGGTGAAACACATTTACTAATTGTGGCTTCACTCTATCATCCTGTCTACCCTCCCAACATGATTGAGAATTCTCAGAAACTCAGGTTGAATAACAGGGATGATGTGGAAGAGTTAAATGAAGACATTTTATTTGAAGATATGGATTCCTGTAACATGATATCTAGTGTACAAAATGATACTTTGAGGCAGAGATCTATACCCAGCTTAAAAAGCCTTTGTGAAAAAGTAGCAGCAGAGTGTCTAGTGGAGCCACGGAATGCCGTCCAACTGCTTGAGATTGCTGATTCTCTTGGAGCAGATGATTTGAAGAAATATTGTGAGGAGATTGTCATGCGCAACCTTGATTACATATTTACAGTTTCGTCACATGCTGTAGCAACGGCCTCACCAGATATTCTGGCTAACCTTGAGAGGTTGTTAGACCAGAGATCATCTGAGCCATGGAGTCACCGTCGGCTCCCTACTCCAACTGCTACTTTCCCTGCCATCATTAACAGTGAAGAGGATGATAGTGAGATAGAGTTTCAGAGGACTCGTGACAAACCCATGAAAATGTCTGCAATGAAATTGGAGAAAGTCCAAAGATTAGATTCCTTTCTACAGCCCAAGGATGATCCTAATAAAGAAATCTCTAAAGTAGTCCGAGCTATAAGGAAGAAGTTGCAGCAGATTGAGATGCTTGAAGCTAAGCAGTCTAATGGACATCTTCTCGATGACCAGCAGCTTGCAAAGCTTCAATCTAAGTTAGCACTTGAGAGCTCACTTGCAGAGCTAGGTGTTCCTGTCGAGACATCACAGAATAAAGAATCATCTTCTATGTTACCTGAAGGGAAAGGTAGTAAGAAGGGTAAACTATCGAAAAAACAAAGGAGAAAGAGTGGCAAATCAAGCATAGAGCAGACAGAAATAGAATCTGTTTGCTCTAAAAGTGAAGCCACTCCCAAATCTGAGGACCTGTTAGACATTGACATCATGGGGGTTCCTGATTCAAAGgtGGAAGAGGATGCTGTGTGTGAACAGATCACAGCAGACCTAGGTGCAAAAGATTTAGCTTTTGTTGTGCAGAAGAAAGATGCTTTAGAGTTGCTGAAAGCCAAGGGTCAGTCACCAAAGGCTTCAAAGAAGAAGAGCAAGAAGGGCGGGCTTTCTATGTTTCTGAATGGTGCTCTTGATGAAGCCCAGAAAGAGGTGGCTCCCCCTCCACCAACACCAAGAAATGATGGTCCTGCATGGGGTGGGGCCAAGTTCATGAAGGGTTCTGCATCTCTTCGTGAAATCCAGGATGAACAGAGCAAAATAAAGGTAAACAAGCTGGCCGGGAGCAAAGATAAGATGGAAGATCTTTCTGATTTTGGTAGTGGGGGGAAAACAAAGTTGAGTTCATTTCTTCCTTCCAGCCCAATACCTGTTACCTCAACTCGTAGTTCCCAGGTATCTGATGGAGAAATAAGTACCCCTCCTTGGGCTGCTTCAGGAACCCCTCCCCTACCTTCTCGGCCATCATTAAGGGACATCCAAATGCAACAGGGAAAGAAACAACAAAGCCTTTCACATAGTCCAAAGACTAGAACAGCTGGATTTTCCATCCCTACCGGTCAAGGCTCACCGTCCGAAACTGCCGGAGTGAGTCGCTGGTTCAAGCCTGAAGTGGAAACACCATCCTCGATTCGATCTATTCAAATTGAGGAAAAAGCTATGAAAGATCTCAAGCGCTTCTATAGCAGTGTCAAGATTGTTAGAAAGCAATCTTGA 3249 0.446 MEVAVSPQVQKLNLQTTGRKILYAGSQKELWLVVREGSLNDVEVALASLKKSGGNINLRNTFGLTLLHIATWRNHIPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLLQHGASITLEDSKSRIPVDLLSGSVFQVLGNEHSSVATEVFSWGSGANYQLGTGNAHIQKLPCKVDSLGGSFIKLISAGKFHSVALTARGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVISGLGSRRVMAIAAAKHHTVVATQGGEVFTWGSNREGQLGYPSVDTQPTPRRVSSLRSKIVAVAAANKHTAVVSDLGEVFTWGCNREGQLGYGTSNSASNYTPHVVESLKGKTLTRVSAAKYHTIVLGSDGEVFTWGHRLVTPKRVVVSRNLKKSGSTPLKFHRKERLNVVSIAAGMVHSMALTDDGALFYWVSSDPDLRCQQLYAMCGRNMVSISAGKYWTAAVTATGDVYMWDGKKGKDKPLVATRLHGVKKATSVSVGETHLLIVASLYHPVYPPNMIENSQKLRLNNRDDVEELNEDILFEDMDSCNMISSVQNDTLRQRSIPSLKSLCEKVAAECLVEPRNAVQLLEIADSLGADDLKKYCEEIVMRNLDYIFTVSSHAVATASPDILANLERLLDQRSSEPWSHRRLPTPTATFPAIINSEEDDSEIEFQRTRDKPMKMSAMKLEKVQRLDSFLQPKDDPNKEISKVVRAIRKKLQQIEMLEAKQSNGHLLDDQQLAKLQSKLALESSLAELGVPVETSQNKESSSMLPEGKGSKKGKLSKKQRRKSGKSSIEQTEIESVCSKSEATPKSEDLLDIDIMGVPDSKVEEDAVCEQITADLGAKDLAFVVQKKDALELLKAKGQSPKASKKKSKKGGLSMFLNGALDEAQKEVAPPPPTPRNDGPAWGGAKFMKGSASLREIQDEQSKIKVNKLAGSKDKMEDLSDFGSGGKTKLSSFLPSSPIPVTSTRSSQVSDGEISTPPWAASGTPPLPSRPSLRDIQMQQGKKQQSLSHSPKTRTAGFSIPTGQGSPSETAGVSRWFKPEVETPSSIRSIQIEEKAMKDLKRFYSSVKIVRKQS 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1755 1082 Pfam Regulator of chromosome condensation (RCC1) repeat 155 202 IPR000408 -
Ssu4g1755 1082 Pfam Regulator of chromosome condensation (RCC1) repeat 316 366 IPR000408 -
Ssu4g1755 1082 Pfam Regulator of chromosome condensation (RCC1) repeat 265 312 IPR000408 -
Ssu4g1755 1082 Pfam Regulator of chromosome condensation (RCC1) repeat 206 260 IPR000408 -
Ssu4g1755 1082 SUPERFAMILY Ankyrin repeat 38 136 IPR036770 -
Ssu4g1755 1082 SUPERFAMILY RCC1/BLIP-II 398 507 IPR009091 -
Ssu4g1755 1082 MobiDBLite consensus disorder prediction 1001 1039 - -
Ssu4g1755 1082 MobiDBLite consensus disorder prediction 760 820 - -
Ssu4g1755 1082 MobiDBLite consensus disorder prediction 864 1043 - -
Ssu4g1755 1082 PRINTS Chromosome condensation regulator RCC1 signature 318 332 IPR000408 -
Ssu4g1755 1082 PRINTS Chromosome condensation regulator RCC1 signature 155 171 IPR000408 -
Ssu4g1755 1082 PRINTS Chromosome condensation regulator RCC1 signature 265 281 IPR000408 -
Ssu4g1755 1082 PRINTS Chromosome condensation regulator RCC1 signature 208 224 IPR000408 -
Ssu4g1755 1082 PRINTS Chromosome condensation regulator RCC1 signature 189 202 IPR000408 -
Ssu4g1755 1082 PRINTS Chromosome condensation regulator RCC1 signature 415 433 IPR000408 -
Ssu4g1755 1082 PRINTS Chromosome condensation regulator RCC1 signature 302 318 IPR000408 -
Ssu4g1755 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 154 205 IPR000408 -
Ssu4g1755 1082 Pfam Ankyrin repeats (3 copies) 46 127 IPR002110 GO:0005515
Ssu4g1755 1082 ProSiteProfiles Ankyrin repeat profile. 62 94 IPR002110 GO:0005515
Ssu4g1755 1082 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 192 202 IPR000408 -
Ssu4g1755 1082 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 1081 - -
Ssu4g1755 1082 ProSiteProfiles Ankyrin repeat region circular profile. 96 127 - -
Ssu4g1755 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 264 IPR000408 -
Ssu4g1755 1082 Coils Coil 520 540 - -
Ssu4g1755 1082 Coils Coil 709 729 - -
Ssu4g1755 1082 Gene3D - 26 128 IPR036770 -
Ssu4g1755 1082 Gene3D Potassium Channel Kv1.1; Chain A 544 619 IPR011333 -
Ssu4g1755 1082 ProSiteProfiles Ankyrin repeat region circular profile. 62 93 - -
Ssu4g1755 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 369 IPR000408 -
Ssu4g1755 1082 MobiDBLite consensus disorder prediction 953 985 - -
Ssu4g1755 1082 PANTHER ANKYRIN REPEAT FAMILY PROTEIN / REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 1 1081 - -
Ssu4g1755 1082 SMART ANK_2a 96 125 IPR002110 GO:0005515
Ssu4g1755 1082 SMART ANK_2a 62 91 IPR002110 GO:0005515
Ssu4g1755 1082 ProSiteProfiles Ankyrin repeat profile. 96 128 IPR002110 GO:0005515
Ssu4g1755 1082 MobiDBLite consensus disorder prediction 924 950 - -
Ssu4g1755 1082 Gene3D - 129 390 IPR009091 -
Ssu4g1755 1082 Gene3D - 391 510 IPR009091 -
Ssu4g1755 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 315 IPR000408 -
Ssu4g1755 1082 SUPERFAMILY RCC1/BLIP-II 118 431 IPR009091 -
Ssu4g1755 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 425 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1755 Ssu-Chr4 31611420 31620646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1755 33 136 Acyl Lipid Metabolism Gene Families AT5G53470 32.692 8.00e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1755 K24810 - gmx:100800604 1910.19