Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1754 ATGCAGGTAACTGAGACGAGGACGGTTCAAGTTAAGCAGCTTTCAGATCTAGCTGGTGAGAGAGAGATTCACGAGTTCTTCTCCTTTTCTGGAGAAATCGAGCATGTTGAGATCCTCAGTGAAGATGGGAAATCAAAGACTGCATATGTGACATTTAAAGATCCCAAAGCACTTGAAATTGCGTTATTGTTATCGGGAGCAACAATAGTAGACCAGGTCGTGAGGATAACTCCAGCTGAGAACTACGTACCAAATCGTGAGATGCAGGAAGTAAGGGTGGTGGAAAATGCTATAAATGTTGTTCCTTCTGAAAATGTCTCATCAAATATTGAGGAGGGGAAAGCCAGCCCCACCAATAGAAGAATGTACCTCAGTAGGGCACAAGATGCAGTTACAAGTATGCTGGCAAAAGGTTCAGCAATAAGACAAGATGCGGTGAACAAAGCTAAAGCATTTGATGAAAAGCATCAATTGACTGCTAATGCATCTGCAAAGGTCATTTCTTTTGACAGGAGAGTTGGGCTGACAGAGAAATTGACAGTAGGGATTGCTGCAGTGAATCAGAAAGTGAAGTCTGTGGATCAGAGGCTTCATGTTTCAGACAAAACAATGGCAGCAATAATTGCAGCTGAGAGGAAGTTGAATGACACTGGATCAGCTGTCAAAACAAGCAGATATGTGACTGCTGGAACAGCATGGTTTAATGGTGCTTTTAGTAAGGTGTCAAAGGCTGGACATGTTGCTAGTACTAAAACTAGAGAAAAATTTCATTTGGCTGTTTCAAACTTGACAGCAAAGGAGCCGTCAATGGCTGCTGCATAG 822 0.4258 MQVTETRTVQVKQLSDLAGEREIHEFFSFSGEIEHVEILSEDGKSKTAYVTFKDPKALEIALLLSGATIVDQVVRITPAENYVPNREMQEVRVVENAINVVPSENVSSNIEEGKASPTNRRMYLSRAQDAVTSMLAKGSAIRQDAVNKAKAFDEKHQLTANASAKVISFDRRVGLTEKLTVGIAAVNQKVKSVDQRLHVSDKTMAAIIAAERKLNDTGSAVKTSRYVTAGTAWFNGAFSKVSKAGHVASTKTREKFHLAVSNLTAKEPSMAAA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1754 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 81 IPR000504 GO:0003723
Ssu4g1754 273 PANTHER RNA BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 4 272 - -
Ssu4g1754 273 SUPERFAMILY RNA-binding domain, RBD 4 88 IPR035979 GO:0003676
Ssu4g1754 273 SMART rrm1_1 8 77 IPR000504 GO:0003723
Ssu4g1754 273 Gene3D - 1 91 IPR012677 -
Ssu4g1754 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 72 IPR000504 GO:0003723
Ssu4g1754 273 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 4 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1754 Ssu-Chr4 31575573 31579677 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1754 - - gmx:100812446 493.041