Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu4g1746 | ATGGACAGGCTGATAAGAGTAGACCCAACAAACACGGTCCCGATAAGGGTCGAGCCAGGGCAAAAGTGCCACGGCCAAATCACCTTACGCAATGTGATGTACACGATGCCCGTGGCCTTCAGGCTTCAGCCCCTGATCAAAACGCGTTACACGGTGAAGCCTCAATCGGGGATCATATCCCCGTTAGCCACCGTAACCATCGAGATCCTCTACCACCTCCCACAAGCCTCCACCCTCCCCCACTCCGACGACTCCTTCCTCCTCCACAGCGTCGTCGTCCCCGGCGCCGCCGTCAGAGAACCCTCCTCCATGTTCGAGTCCGTCCCCAGCGACTGGTTCACCCCCAAAAAGAAACAAGTCTTCATCGACAGCGGCATCAAAATCATCTTCGTGGGCTCGCTCGTCCTGGCCCAACTCGTCCAAGACGGGTCCATGGACGAAATCAGGGAAGTGCTGGAACACAGCGATCCCACGTGGAAGGCCGTTGACTCCGTTGACCCAAACGGGGACACCCTCCTCCACGTGGCAACTTCTCGATGCAGACCCGACCTCGTTCAACTCCTCCTCGAGTTCAATGCGGACATAGAGGCGAAAAACCGTTCCGGTTCAACACCACTCGAAGCGGCGTGTTCTTCAGGAGAAGAATTAATCGTCGAGCTTCTGTTAGCTCACAAGGCGACAACAGAGAGAAAAGAATCATCCCCGTTGGGGGCGATTCACCTGTCCGCCAGAGAAGGACACGTGGAGGTTCTGAGACTTTTGTTGCTCAAAGGCGCGAGCGTTGACTCGCTGACCAGAGACGGTAACACGGCGTTACACCTCGCGGTTAAAGAAGGTAAAAGAGACTGCGCGAGACTGCTGCTCGCGAACAACGCGAGAACGGAGATTCGCGATTCCCGAGACGGTGACACGTGTTTGCACGTGGCGGCGGGTTTGGGGGACGAGAGCATGGTGAAGCTCTTGCTGAACAAGGGCGCGAACAAGGACGTGAGGAATTTTTCGGGTAAGACTGCTTATGATACCGCGGAGGAGAACGGACACGCGCGCGTGTTCGACGCGCTGCGTCTGGGGGACGGTCTGTGCGTTGCGGCGAGGAAGGGTGAGGTGAGGAGTATTCAGAGGTTGATTGAGAGCGGCGCGGTGTTGAACGGGAGGGACCAGCACGGTTGGACGGCGTTGCACAGGGCGTGTTTCAAGGGGCGCGTGGACGCGGTTCGGGCTTTGTTGGAGAAAGGGATCGACCGTGACGCGAAGGACGAGGACGGGTACACGGCGTTGCACTGCGCGGTGGAGGCGGGGCACGCTGACGTGGCGGAGGTATTGGTGAAGAAGGGTGTGGACGTGGAGGCGAGGAGCAACAAGGGGGTCGCGGCTTTGCAGATAGCGGAGGCGTTGGGGTACGTCGGGATCGCGAGGGTGCTCGTTGGGGCTGGGGCGGGGAGGGACGGTGCCGGACACGTGGCGGAGGGAGCGGCTGCGGTGGGTGGggagatgaagaaggagaagaggaagaagatggggaggaggagagagagagggattCGGGGTAGCTTTGATCGTTCGATGGCTTTGGCTGTGCTGTAG | 1584 | 0.5751 | MDRLIRVDPTNTVPIRVEPGQKCHGQITLRNVMYTMPVAFRLQPLIKTRYTVKPQSGIISPLATVTIEILYHLPQASTLPHSDDSFLLHSVVVPGAAVREPSSMFESVPSDWFTPKKKQVFIDSGIKIIFVGSLVLAQLVQDGSMDEIREVLEHSDPTWKAVDSVDPNGDTLLHVATSRCRPDLVQLLLEFNADIEAKNRSGSTPLEAACSSGEELIVELLLAHKATTERKESSPLGAIHLSAREGHVEVLRLLLLKGASVDSLTRDGNTALHLAVKEGKRDCARLLLANNARTEIRDSRDGDTCLHVAAGLGDESMVKLLLNKGANKDVRNFSGKTAYDTAEENGHARVFDALRLGDGLCVAARKGEVRSIQRLIESGAVLNGRDQHGWTALHRACFKGRVDAVRALLEKGIDRDAKDEDGYTALHCAVEAGHADVAEVLVKKGVDVEARSNKGVAALQIAEALGYVGIARVLVGAGAGRDGAGHVAEGAAAVGGEMKKEKRKKMGRRRERGIRGSFDRSMALAVL | 527 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu4g1746 | 527 | ProSiteProfiles | Ankyrin repeat profile. | 234 | 266 | IPR002110 | GO:0005515 | |
| Ssu4g1746 | 527 | ProSiteProfiles | Ankyrin repeat profile. | 388 | 420 | IPR002110 | GO:0005515 | |
| Ssu4g1746 | 527 | PANTHER | CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED | 1 | 527 | - | - | |
| Ssu4g1746 | 527 | Pfam | Ankyrin repeats (3 copies) | 147 | 227 | IPR002110 | GO:0005515 | |
| Ssu4g1746 | 527 | Pfam | Ankyrin repeats (3 copies) | 360 | 451 | IPR002110 | GO:0005515 | |
| Ssu4g1746 | 527 | Pfam | Ankyrin repeats (3 copies) | 239 | 332 | IPR002110 | GO:0005515 | |
| Ssu4g1746 | 527 | Gene3D | - | 233 | 356 | IPR036770 | - | |
| Ssu4g1746 | 527 | ProSiteProfiles | Ankyrin repeat region circular profile. | 388 | 420 | - | - | |
| Ssu4g1746 | 527 | SUPERFAMILY | PapD-like | 2 | 146 | IPR008962 | - | |
| Ssu4g1746 | 527 | ProSiteProfiles | Ankyrin repeat profile. | 267 | 299 | IPR002110 | GO:0005515 | |
| Ssu4g1746 | 527 | ProSiteProfiles | Ankyrin repeat profile. | 301 | 333 | IPR002110 | GO:0005515 | |
| Ssu4g1746 | 527 | ProSiteProfiles | Ankyrin repeat region circular profile. | 234 | 262 | - | - | |
| Ssu4g1746 | 527 | PANTHER | ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE | 1 | 527 | - | - | |
| Ssu4g1746 | 527 | Gene3D | Immunoglobulins | 1 | 129 | IPR013783 | - | |
| Ssu4g1746 | 527 | ProSiteProfiles | Ankyrin repeat region circular profile. | 421 | 453 | - | - | |
| Ssu4g1746 | 527 | ProSiteProfiles | Major sperm protein (MSP) domain profile. | 4 | 131 | IPR000535 | - | |
| Ssu4g1746 | 527 | SUPERFAMILY | Ankyrin repeat | 162 | 482 | IPR036770 | - | |
| Ssu4g1746 | 527 | PRINTS | Ankyrin repeat signature | 317 | 331 | IPR002110 | GO:0005515 | |
| Ssu4g1746 | 527 | PRINTS | Ankyrin repeat signature | 268 | 283 | IPR002110 | GO:0005515 | |
| Ssu4g1746 | 527 | SMART | ANK_2a | 201 | 230 | IPR002110 | GO:0005515 | |
| Ssu4g1746 | 527 | SMART | ANK_2a | 421 | 450 | IPR002110 | GO:0005515 | |
| Ssu4g1746 | 527 | SMART | ANK_2a | 267 | 296 | IPR002110 | GO:0005515 | |
| Ssu4g1746 | 527 | SMART | ANK_2a | 234 | 263 | IPR002110 | GO:0005515 | |
| Ssu4g1746 | 527 | SMART | ANK_2a | 168 | 197 | IPR002110 | GO:0005515 | |
| Ssu4g1746 | 527 | SMART | ANK_2a | 301 | 330 | IPR002110 | GO:0005515 | |
| Ssu4g1746 | 527 | SMART | ANK_2a | 388 | 417 | IPR002110 | GO:0005515 | |
| Ssu4g1746 | 527 | ProSiteProfiles | Ankyrin repeat profile. | 421 | 453 | IPR002110 | GO:0005515 | |
| Ssu4g1746 | 527 | ProSiteProfiles | Ankyrin repeat region circular profile. | 267 | 298 | - | - | |
| Ssu4g1746 | 527 | ProSiteProfiles | Ankyrin repeat region circular profile. | 301 | 332 | - | - | |
| Ssu4g1746 | 527 | Pfam | MSP (Major sperm protein) domain | 5 | 104 | IPR000535 | - | |
| Ssu4g1746 | 527 | ProSiteProfiles | Ankyrin repeat profile. | 201 | 233 | IPR002110 | GO:0005515 | |
| Ssu4g1746 | 527 | Gene3D | - | 357 | 485 | IPR036770 | - | |
| Ssu4g1746 | 527 | ProSiteProfiles | Ankyrin repeat region circular profile. | 168 | 200 | - | - | |
| Ssu4g1746 | 527 | ProSiteProfiles | Ankyrin repeat profile. | 168 | 200 | IPR002110 | GO:0005515 | |
| Ssu4g1746 | 527 | Gene3D | - | 130 | 232 | IPR036770 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu4g1746 | 300 | 462 | Miscellaneous Gene Families | AT2G31820 | 34.225 | 1.61e-13 | 71.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu4g1746 | - | - | gmx:100782232 | 841.647 |