Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1739 ATGCAAGTTTTTTCCAATAAAGGTGAAAATGCTTCGTCAGTTGTTGGTCCAAGGCCAATGGAATGGTCTACTGTTCCATATAGTGCTCCTCTAGCTCCTGGCCAAATGGAAAGCAGCAGACCTCAAGTTTGGAATCACCAGTTAATCATGTTACTGTCAAGTCACCAGAGTGTTATATATACCATGAAGTTCAAGCCAGCAGGATTAGATGTTGCATTTGGATCTCATGACAGGGAAATTTTCCTCTGGAATGTGCATAGGGATTGCAAGAACTTCATGGTTCTTTGA 288 0.4167 MQVFSNKGENASSVVGPRPMEWSTVPYSAPLAPGQMESSRPQVWNHQLIMLLSSHQSVIYTMKFKPAGLDVAFGSHDREIFLWNVHRDCKNFMVL 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1739 95 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 52 85 - -
Ssu4g1739 95 MobiDBLite consensus disorder prediction 1 20 - -
Ssu4g1739 95 ProSiteProfiles Trp-Asp (WD) repeats profile. 52 85 IPR001680 GO:0005515
Ssu4g1739 95 SUPERFAMILY WD40 repeat-like 44 86 IPR036322 GO:0005515
Ssu4g1739 95 Gene3D - 45 95 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1739 Ssu-Chr4 31235097 31235384 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1739 K12857 - gmx:100803276 134.035