Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1737 ATGGACTTCGATCACCACCTAGCGGAGCTTGCCGTTTCCTCACCATGCATTCCCTCCGGCGAGGACTTCCATTTCTACTACAAATTCAAAGAGTTCCGACGCCCGATCGAAGAAATCGCGAGTAGGACGCAGTCAATGCTCGATAAAATCGGTTCCACGGAGAGTATTTGGGGCAGAGGCTCGGCATTTCCCGGTGACGTCGACGACGCGTACGAGTGGCTCGTGAACGCGAACGAGGACGTTTTGGAACTGGTTGATGAGTTGGTGGATGAGTTGCGGAGGGTtaagaaggaggaggaagaggaatgTGAAAACGGGTTCGGGTCGGGTATAGGGACGTTGGGGGCGAAGCCGAAAGTGCCGTTTCACATACCGACGATTAGGAAGCCCCAGTATGGGTACAACATTGTGGTTAATAATGCGAACCAGCCTTTTGAGCATGTTTTGTTGGAGAAGAGTGATGATGGTCAGAGGTTTATTCATCCACTGgAGAAACACTCTGTTTTGGACTTTGTCGATAAAGAAAATCTTGAGAATCTTGTGCCAGTAAAGCCTCCCTCAATAGAATGCACCCCTTTCAAGCTTGTAGAGGAAGTCAAAGGATTGAAGGAGTTGGCTGCTAAGCTGTCTTCGGTTCATGAATTTGCGGTGGATTTGGAACACAATCAATATCGGTCTTTCCAAGGTTTGACTTGCTTGATGCAAATCTCAACCAGGACTGaagattttattatagataCTCTGAAGGTTCGCGATCATGTTGGGCCATACCTAAGGGAAGTCTTCAAGGACCCTACCAAGAAGAAGGTCATGCATGGAGCAGATCGAGACATTGTGTGGCTGCAACGGGATTTTGGCATTTACGTTTGTAATATGTTCGATACTGGCCAGGCTTCAAGAGTTTTAAAGTTGGAGAGATATAGTCTGCTATATCTTTTGCAACACTTTTGTGGGGTTACTGCAAACAAAGAATACCAGAATGCAGATTGGAGACTACGCCCTCTTCCTGAAGTGATGCTAAGATATGGCAGAGAAGATACCCATTATCtgctttatatatatgatttaatgagGATCAAATTATTTACGTTGTCTAAGGAGTCTGAAGGTTCTGATAATCCTCTATTGGAGGTATACAAGCGCAGTTATGATGTCTGCATGCAGCTATATGAGAAAGAGCTGCTGACAGAAAACTCGTACCTTCATATATATGGGTTGCGAGGGGCTGGTTTTAATGCTCAGCAGCTTGCCGTTGTTTCAGGGCTTTGTGAATGGCGTGACGTTCTTGCTCGTGCAGACGATGAGAGTCCTGGCTATGTATtgccaaataaaattattcttgaaattgCTAAGCAGATGCCTGTCATTATAAGCAATCTACGGCGAATAGTAGGAAAGTCAAAGCTCCCCTATGTTGAGCGCAGTCTTGATGTCATTGTCAACATTGTCAGACATTCTATGCAAAATGCTGCTGCCTTTGAAGAGGCTGCACTACGCTTGAAAGAAGAACATGCAGCAAGTTTGTCAAATATAGTAGCTGTTAAGGATGGAACTGAAGTACCTCAGACGCAAAACTTAAAGGTTGGATGTGCAGCAACAGGAAGCATTAGAATTGAAAATGACACCGGTATTAATATCTCAGAGAATTGTCTGTTTTCTTCTGACCTGGAGGAGGAAAGTTTTCAGCATCAAGGTGAAGATGGACAAGGAAAAGTTAAATCCGATTGTCTCACTTCAGATCTCCCAATGGCCAGTCCCACTATTCCAGAGAAGAATAGGGATGATGCAAATGTTATTGCACTCTCTACAGTGAagGGCAATGGAGCAAATGTTCAGGTGCTAAAAATGCCTACTGGTGCTTTTGATGCGCCACTTCTGGGCAATTCTGTTTCAGAATGGAAGCCCGATCCTAATAATAAGGGCAAGGAGGAGATCAATCTAGAACAGATGAAATCGTCAGTCAATATTCCGTCCCACTTACTTTTGGACAACAGTGAGAAGTCAAAACTAGTTGTAGAAACTCCAAGTGTAGCATATGAAACATCAGACCCCAGAAACCCGTTTCAGGTTCAGTTTCCACCTCCACCCCCGTTGGGAATGTAA 2103 0.4322 MDFDHHLAELAVSSPCIPSGEDFHFYYKFKEFRRPIEEIASRTQSMLDKIGSTESIWGRGSAFPGDVDDAYEWLVNANEDVLELVDELVDELRRVKKEEEEECENGFGSGIGTLGAKPKVPFHIPTIRKPQYGYNIVVNNANQPFEHVLLEKSDDGQRFIHPLEKHSVLDFVDKENLENLVPVKPPSIECTPFKLVEEVKGLKELAAKLSSVHEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIIDTLKVRDHVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYVCNMFDTGQASRVLKLERYSLLYLLQHFCGVTANKEYQNADWRLRPLPEVMLRYGREDTHYLLYIYDLMRIKLFTLSKESEGSDNPLLEVYKRSYDVCMQLYEKELLTENSYLHIYGLRGAGFNAQQLAVVSGLCEWRDVLARADDESPGYVLPNKIILEIAKQMPVIISNLRRIVGKSKLPYVERSLDVIVNIVRHSMQNAAAFEEAALRLKEEHAASLSNIVAVKDGTEVPQTQNLKVGCAATGSIRIENDTGINISENCLFSSDLEEESFQHQGEDGQGKVKSDCLTSDLPMASPTIPEKNRDDANVIALSTVKGNGANVQVLKMPTGAFDAPLLGNSVSEWKPDPNNKGKEEINLEQMKSSVNIPSHLLLDNSEKSKLVVETPSVAYETSDPRNPFQVQFPPPPPLGM 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1737 700 Pfam 3'-5' exonuclease 196 358 IPR002562 GO:0003676|GO:0006139|GO:0008408
Ssu4g1737 700 SMART hrdc7 412 492 IPR002121 GO:0003676
Ssu4g1737 700 Gene3D - 121 400 IPR036397 GO:0003676
Ssu4g1737 700 Gene3D HRDC domain 401 495 IPR044876 -
Ssu4g1737 700 MobiDBLite consensus disorder prediction 675 700 - -
Ssu4g1737 700 PANTHER 3'-5' EXONUCLEASE 608 685 - -
Ssu4g1737 700 PANTHER 3'-5' EXONUCLEASE 1 597 - -
Ssu4g1737 700 SMART 35exoneu6 193 362 IPR002562 GO:0003676|GO:0006139|GO:0008408
Ssu4g1737 700 SUPERFAMILY HRDC-like 395 489 IPR010997 GO:0000166|GO:0044237
Ssu4g1737 700 Coils Coil 78 105 - -
Ssu4g1737 700 ProSiteProfiles HRDC domain profile. 412 493 IPR002121 GO:0003676
Ssu4g1737 700 Pfam PMC2NT (NUC016) domain 14 93 IPR012588 GO:0000176|GO:0006396
Ssu4g1737 700 CDD Rrp6p_like_exo 189 381 - -
Ssu4g1737 700 Pfam HRDC domain 415 468 IPR002121 GO:0003676
Ssu4g1737 700 SUPERFAMILY Ribonuclease H-like 127 392 IPR012337 -
Ssu4g1737 700 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 608 685 IPR045092 GO:0000175|GO:0000467
Ssu4g1737 700 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 1 597 IPR045092 GO:0000175|GO:0000467
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1737 Ssu-Chr4 30969909 31000555 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1737 K12591 - gmx:100804872 966.066