Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1735 ATGAAGGTGGTGGCCCTCGTTAGCGGCGGCAAAGACAGCTGCTATGCCATGATGAAGTCTATTCAATATGGCCACGAgATTGTTGCATTGGCCAATTTGATGCCGCTTGATGATTCTGTGGACGAGCTTGATAGTTACATGTACCAAACTGTTGGGCATCAAATTATCATTGGCTATGCTGAATGCATGGGGTTGCCATTGTTCAGGAGGCGAATACAAGGATCCTCTAGGCATCAGGAGCTTGGTTACAAAGCAACTCAAGGTGATGAAGTCGAAGACCTGTTCATTCTGTTACATGAAGTGAAAAGGCAGATACCCTCAGTTACTGCAGTGTCTTCTGGAGCCATTGCATCTGACTATCAGAGATTGCGGGTGGAAAGTGTTTGTTCAAGGTTAGGCCTTGTTTCACTGGCATACTTATGGAAACAAGATCAGTCATTGCTTCTCCAGGAAATGATTGCAAATGGAATTGTAGCTATAACTGTGAAGGTAGCTGCCATGGGTTTGGATCCTGCAAAGCACTTGGGTAAAGAAATAGCCTTCTTAAATGcttatttacataaattgaaAGAATTATATGGAATCAATGTTTGTGGTGAAGGAGGGGAATATGAAACATTAACTCTTGATTGCCCGCTCTTTTCTAATGCTCGCATTGTGCTTGATGAATATCAAGTTGTGATGCACTCTTCAGATTCCATAGCTCCTGTTGGAATCCTTCATCCCTTGGCATTTCATTTGGAAAATAAGGCAGATGTTCAGTATTTAAAATCACAAGACAAAATACATAGGATTTGTACACAGAAACTGGGATCTGTGTTTGAAGTGCAAGACAGTCTAGAAGGATGTGAGGCCACATGCAAGCCTGTAGACTATAGAGCTGACCCAATTGATGGCATAGAACATAAATTTAACATCTCAAGAACGGATAACAAGGGCACATTCTCCATATGTTGCTGGTTGCAAGATTCATGCGATGGTTTGCAGGAAGATTTGGAGATTGTTTTGGGGAAAATTGAATCAGAGTTATTGGTCCTTGGTTTTGGCTGGGAAAATGTCCTCTATATTCACCTTTACATTGATGACATGAATAAGTTCTCTGAGGCAAATGAGACATATGTGAAGTTTATAACACAGGAGAAATGTCCATTTGGTGTTCCGTCTCGTAGTACTGTTGAAATGCCTCTACTAGAAATGGGTTTAAGCAGAGCATACATTGAAGTTCTGGTAGCAAacgataaagataaaaaggttttgcatGTGCAGAGTATTTCATGTTGGGCACCTAGTTGCATTGGGCCATACAGCCAGGCAACCTTGCATGAGGGTATACTTCACATGGCTGGTCAATTGGGGCTTGACCCTCCTACAATGAATCTTTGCAAAGGAGGCCCTGGTGCTGAACTGGAACAAGCACTAAAAAACAGTGAAGCGGTGGCAAAATGCTTTAATTGTTCAATATCGACATCTgcaattgtttttgttatttactgTTCTAAACTTATTTCATCATTGGAGAGACTTGATATTCAGGAGAAACAAGAAACAATCCTTGGGCAGATGAAGATCTCCCATTTACAGGAAGGAGACACTTACAAAGCGTTAGATCCCTTGTtcctttatgttcttgttcCTGATCTACCTAAAAGAGCATGTGTGGAAGTAAAGCCTATTCTTTATGTTGAGGATGGCACAGATGTAGCATTTGAGACCATAGCAGAAAGATCTTGTTCAAAGACACCACCATCTTATTGGGGTTTCAAGCAGGAAAATTGGCATGATTCTTGCATTCAGAAATGTGTGATTTCTGGAAAGATATGTGCCATTATACTGTCTATTACAAGTGAGCTGGCTGCAAAGATATATTTTGATTCTCTGCCTGCTGATTATGTGAATAATAGTCAATATTCTCCCCCCAAGGCACATATGGAGAAGATATCGAAGTTCTGCATTTATATTCTTGACAAAGTTATGACAGATTATGACTTTGCCTGGGAAGATATAATGAGTTTGAGGTTCTACATCCCAGTAAGCCTTCAAATGTCAGTGCAGCTCTTACAACCTATGTTCTGCAATGCACTTTTTGAACTTTCGGAAATGAGTcagaagaaatttaaaagtgGTGAGGAGCCAATCTTCAACATAATACCTGTCATAGGTTCTGGGAGGTCTGCTTCATCCATGGACGATGTAGTAACCTGTGAATTAATGGCTCGGAAATCCtga 2226 0.3935 MKVVALVSGGKDSCYAMMKSIQYGHEIVALANLMPLDDSVDELDSYMYQTVGHQIIIGYAECMGLPLFRRRIQGSSRHQELGYKATQGDEVEDLFILLHEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMIANGIVAITVKVAAMGLDPAKHLGKEIAFLNAYLHKLKELYGINVCGEGGEYETLTLDCPLFSNARIVLDEYQVVMHSSDSIAPVGILHPLAFHLENKADVQYLKSQDKIHRICTQKLGSVFEVQDSLEGCEATCKPVDYRADPIDGIEHKFNISRTDNKGTFSICCWLQDSCDGLQEDLEIVLGKIESELLVLGFGWENVLYIHLYIDDMNKFSEANETYVKFITQEKCPFGVPSRSTVEMPLLEMGLSRAYIEVLVANDKDKKVLHVQSISCWAPSCIGPYSQATLHEGILHMAGQLGLDPPTMNLCKGGPGAELEQALKNSEAVAKCFNCSISTSAIVFVIYCSKLISSLERLDIQEKQETILGQMKISHLQEGDTYKALDPLFLYVLVPDLPKRACVEVKPILYVEDGTDVAFETIAERSCSKTPPSYWGFKQENWHDSCIQKCVISGKICAIILSITSELAAKIYFDSLPADYVNNSQYSPPKAHMEKISKFCIYILDKVMTDYDFAWEDIMSLRFYIPVSLQMSVQLLQPMFCNALFELSEMSQKKFKSGEEPIFNIIPVIGSGRSASSMDDVVTCELMARKS 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1735 741 Gene3D HUPs 1 157 IPR014729 -
Ssu4g1735 741 SUPERFAMILY YjgF-like 417 564 IPR035959 -
Ssu4g1735 741 SUPERFAMILY YjgF-like 326 400 IPR035959 -
Ssu4g1735 741 Pfam Endoribonuclease L-PSP 428 557 IPR006175 -
Ssu4g1735 741 Gene3D - 160 256 - -
Ssu4g1735 741 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1 241 - -
Ssu4g1735 741 Gene3D - 308 411 IPR035959 -
Ssu4g1735 741 CDD eu_AANH_C_2 435 559 - -
Ssu4g1735 741 Gene3D - 412 562 IPR035959 -
Ssu4g1735 741 CDD Alpha_ANH_like_IV 2 214 IPR002761 -
Ssu4g1735 741 Pfam Diphthamide synthase 1 230 IPR002761 -
Ssu4g1735 741 TIGRFAM MJ0570_dom: MJ0570-related uncharacterized domain 1 231 IPR002761 -
Ssu4g1735 741 PANTHER DOMAIN OF UNKNOWN FUNCTION 71 DUF71 -CONTAINING PROTEIN 1 740 IPR030662 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1735 K06927 - gmx:100807009 1366.29