Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1734 ATGGCAAATAGACACCATCCCTCAGTGTTTCTTGTGTTGATTACTATTTTACTTTCTATCCATTACTCGGAGCAATTGCAATCCTCTCACTCTCAGACTCTTATCAGAATTCAGCAGCTATTGAACTTTCCTGCTGCTTTAAGCAAGTGGAACAACAACACAGACTTTTGCAACACAGATTCAAACTCTTCCCTCACTGTAGTGTGCTATGAAGACACCATAACACAGCTGCACATAATAGGGGAAAGAAGGGATTCACCTCTCCCTCGAAATTTCTCAATAGATTCCTTTGTCACAACACTAGTAAGGCTTCCCAGTTTGAAAGTCCTCACATTGGTTTCCCTTGGTATATGGGGTCCTTTGCCTGGTAAAATAGCTCGTTTGTCATCCCTGGAAATAGTTAATGTGAGTTCCAATTTTCTCTATGGTTCCCTTCCTCAGGAACTTTCATCACTGTCAAATCTCCACACACTCATTCTTGATAATAACATGTTGGCTGATAGGCTTCCTGATTGGCTTGATTCACTTCCAGCCTTAACTGTGCTAAGTTTGAAGAATAATTTGTTCAATGGATCTCTACCGAATTCGCTTGGTAGCATGGAGAATTTGAGGACTCTTTCACTTTCTCATAATCACTTTTATGGGGTGGTGCCTGATTTGAGCCGATTGACAAATCTTCAAGTGCTTGAATTAGATGATAATGCTTTTGGACCGCAGTTTCCTCAGCTTGGTAACAAGTTGGTTACACTAGTGCTAAGAAACAATAGGTTCAGGTCTGGTATTCCTGCTGAATTGAGCTCATGTTATCAGCTTGGACGATTGGATATCTCGTCAAACTCATTTGTGGGACCGTTTCAGCCAGGATTGTTGTCACTTCCTTCTATTACTTATCTGAATATTTCTGGGAACAAATTAACTGGGATGCTTTTTGAGAATCTGCCTTGCAATTCTGAGCTTGATGTAGTTGATTTATCCTCAAATCTTTTGACTGGGAGCTTACCTAGATGTTTAGTGTCAAATTCCAGTGATAGGACTTTCCTGTATGCTAGAAATTGTCTAGACACTGCAAATCAAAATCAGCAGCCGCAGCCCTTTTGCCACACTGAAGCCTTAGCTGTGGGAATATTACCTGAGAGAAAGAAGCACAAACAAGTATCTAAGGTAGTTCTTTCCCTTGGCATAGTAGGTGGAACTCTTGGAGGAGTAGCACTTGTTTTgctaattttctttattgttagaAGAGGAAATACcagaaacaaaatgaagaatCCTCCAGCAAGATTAATATCAGAAAATGCTGCTTCTGGTTACACCTCTAAGTTGTTTTCTGATGCACGTaatttcctctctctctctctctcacacacacacacacacacgtgtgcACGATCAAACTACCTTGACCCATTTTATGCATTTCTTCATCCACATGCACAATAG 1440 0.3826 MANRHHPSVFLVLITILLSIHYSEQLQSSHSQTLIRIQQLLNFPAALSKWNNNTDFCNTDSNSSLTVVCYEDTITQLHIIGERRDSPLPRNFSIDSFVTTLVRLPSLKVLTLVSLGIWGPLPGKIARLSSLEIVNVSSNFLYGSLPQELSSLSNLHTLILDNNMLADRLPDWLDSLPALTVLSLKNNLFNGSLPNSLGSMENLRTLSLSHNHFYGVVPDLSRLTNLQVLELDDNAFGPQFPQLGNKLVTLVLRNNRFRSGIPAELSSCYQLGRLDISSNSFVGPFQPGLLSLPSITYLNISGNKLTGMLFENLPCNSELDVVDLSSNLLTGSLPRCLVSNSSDRTFLYARNCLDTANQNQQPQPFCHTEALAVGILPERKKHKQVSKVVLSLGIVGGTLGGVALVLLIFFIVRRGNTRNKMKNPPARLISENAASGYTSKLFSDARNFLSLSLSHTHTHTCARSNYLDPFYAFLHPHAQ 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1734 479 ProSiteProfiles Leucine-rich repeat profile. 202 224 IPR001611 GO:0005515
Ssu4g1734 479 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 9 447 - -
Ssu4g1734 479 Pfam Leucine rich repeat 153 213 IPR001611 GO:0005515
Ssu4g1734 479 Gene3D Ribonuclease Inhibitor 241 359 IPR032675 -
Ssu4g1734 479 SMART LRR_typ_2 292 312 IPR003591 -
Ssu4g1734 479 SMART LRR_typ_2 176 199 IPR003591 -
Ssu4g1734 479 SMART LRR_typ_2 152 175 IPR003591 -
Ssu4g1734 479 SMART LRR_typ_2 200 223 IPR003591 -
Ssu4g1734 479 Gene3D Ribonuclease Inhibitor 27 240 IPR032675 -
Ssu4g1734 479 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 9 447 - -
Ssu4g1734 479 SUPERFAMILY L domain-like 50 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1734 Ssu-Chr4 30907275 30908714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1734 43 446 Miscellaneous Gene Families AT3G03770 60.837 3.18e-150 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1734 - - gmx:100807539 783.482