Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1730 ATGGAAGCTCAACAGGTTCTTTCCATATTTTGTCCAAAACCATCAACAGCACCATCAATTCCAATTGTGAAACAACCATTCTGTTTAAAGTTCCCTCCTGTACCCTCTTCATTGTCATACCCTTCTGTTCAGTCTCAGAATCTTGACGTACCTAGTGGGGCTTTTCATGCTATCAGCATTTCACACAAAGAAGTGTGTTCTAGTTCTTGGAAGAGAATATGGTGTAGCAGGAGTAGTACTGCAGAACCAAAGGAGGGCAAAGACATGAGGGATCAGGTCACAGTGAGAAGGAAAAAGCTAGCAGTTTTTGTGTCTGGAGGAGGATCCAACTTCAGATCAATTCATGAGGCTTCCAAAAGGGGATCACTTCATGGAGATGTTCTTGTATTGGTCACAAATAAAAGTGAGTGTGGAGGTGCGGTGTATGCAAGAAATAATGGTATCCCAGTTATATTGTTCCCTAAAGCAAAGGATGAATCCAATGGATTATCTCCAAGTGACCTTGTTGATACACTAAGGAAATTCGAGgttgattttattcttttagctGGATACCTCAAACTTATACCAGTGGAATTGATCCGAGCTTATGAAAGATCTATATTAAACATTCACCCATCCCTTCTTCCAGCTTTTGGAGGCAAGGGCTACTATGGCATGAAGGTGCATAAAGCAGTACTTGCTTCTGGAGCTAGATTTTCAGGTCCAACAATTCATTTTGTTGATGAACACTATGACACAGGGCGTATCCTTGCCCAGCGTGTTGTCCCTGTGCTTGCCAATGATACTGCAGAGGAGTTGGCTGCAAGGGTTCTCAATGAGGAGCACCGATTATATGTGGAGGTGGTGGAGGCTCTATGCGAAAAGCGTGTCGTTTGGAGGGAAGATGGTGTTCCTCTCATCCAAAGCAAAGAAAACCCCAATGAGTTTAGCTGA 936 0.4252 MEAQQVLSIFCPKPSTAPSIPIVKQPFCLKFPPVPSSLSYPSVQSQNLDVPSGAFHAISISHKEVCSSSWKRIWCSRSSTAEPKEGKDMRDQVTVRRKKLAVFVSGGGSNFRSIHEASKRGSLHGDVLVLVTNKSECGGAVYARNNGIPVILFPKAKDESNGLSPSDLVDTLRKFEVDFILLAGYLKLIPVELIRAYERSILNIHPSLLPAFGGKGYYGMKVHKAVLASGARFSGPTIHFVDEHYDTGRILAQRVVPVLANDTAEELAARVLNEEHRLYVEVVEALCEKRVVWREDGVPLIQSKENPNEFS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1730 311 ProSitePatterns Phosphoribosylglycinamide formyltransferase active site. 235 258 IPR001555 -
Ssu4g1730 311 Pfam Formyl transferase 98 283 IPR002376 GO:0009058
Ssu4g1730 311 Hamap Phosphoribosylglycinamide formyltransferase [purN]. 99 289 IPR004607 GO:0004644|GO:0006189
Ssu4g1730 311 CDD FMT_core_GART 99 286 IPR004607 GO:0004644|GO:0006189
Ssu4g1730 311 Gene3D - 78 309 - -
Ssu4g1730 311 SUPERFAMILY Formyltransferase 98 299 IPR036477 GO:0009058
Ssu4g1730 311 TIGRFAM PurN: phosphoribosylglycinamide formyltransferase 98 291 IPR004607 GO:0004644|GO:0006189
Ssu4g1730 311 PANTHER PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE 75 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1730 Ssu-Chr4 30796134 30797853 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1730 K00601 - gmx:548052 523.087