Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1727 ATGTATCTGCCCCGCCACATCCTCACCAGACTCTACCCGCACCGCCGCCACTTCTCCCATTCCGCCGCCGCCATCCTCCACCCCCCGGAGCCGGAGCCGCTGACGTACCTGGACGGGTTTCCCCGGCCGGATCCCAAGCACGACGAGACGATCCTCGCCGTACCCCGCGCGGACTCCGGGAAGAACATATCGGGGAAGGAGCGGCGCGCCGGGCGCTTGCCGAGTATCGTGTTCGAGCAGGAGGACGGCCAGCACGGCGGCAACAAGCGCCTCATATCCGTCCGCACCGACCAGATCAGAAAGCTCGTCAGCCACCTCGGCAGCTCCTTCTTCCTCTCCCGCCTCTTCCGCCTCGAAGTCCGCGCCCAGTTCGACTCCGACGACGTCGTCGAGAGCGTTCGCGTTTTGCCCCGCAAGATTCATTTGAAAGCTGGTACAGATGCACCATTGAATGTGACCTTTATTAGGGCTCCCTCGCATGCTTTGTTGAAAGTTGATGTTCCTCTTGTCTTCAGAGGAGAAGATGTATCACCTGGACTTAAGAAAGGTGCTTCTTTGAATACCATCAAAAGGACTGTCAAGTACTTATGCCCTGCTGACATTATTCCCCCATATATTGACGTGGATTTAAGTGAGTTGGATGTGGGCCAGAAGTTGGTCATGGGAGATCTCAAAGTTCATCCTGCTTTAAAACTTCTTCAGTCAAATGATGAAGCTGTTTGTAAAATTATGGGCCAAAGAGTTTCtgaaatacaaaagaaatctAAGTAA 771 0.537 MYLPRHILTRLYPHRRHFSHSAAAILHPPEPEPLTYLDGFPRPDPKHDETILAVPRADSGKNISGKERRAGRLPSIVFEQEDGQHGGNKRLISVRTDQIRKLVSHLGSSFFLSRLFRLEVRAQFDSDDVVESVRVLPRKIHLKAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDVSPGLKKGASLNTIKRTVKYLCPADIIPPYIDVDLSELDVGQKLVMGDLKVHPALKLLQSNDEAVCKIMGQRVSEIQKKSK 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1727 256 SUPERFAMILY Ribosomal protein L25-like 55 245 IPR011035 GO:0006412
Ssu4g1727 256 Pfam Ribosomal protein TL5, C-terminal domain 163 245 IPR020057 -
Ssu4g1727 256 Gene3D Ribosomal protein L25, beta domain 161 252 IPR037121 -
Ssu4g1727 256 PANTHER BNAA01G13300D PROTEIN 15 254 - -
Ssu4g1727 256 Pfam Ribosomal L25p family 53 154 IPR029751 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ssu4g1727 256 PANTHER RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEIN 15 254 - -
Ssu4g1727 256 CDD Ribosomal_L25_TL5_CTC 50 156 IPR029751 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ssu4g1727 256 Gene3D Ribosomal Protein L25; Chain P 50 157 IPR020056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1727 Ssu-Chr4 30753453 30756644 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1727 K02897 - gmx:100809143 461.84