Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1721 atgctAGCATGTACTAGCAGCTCCCTCCATGGCCTCGCTGCACTGCAACGCCATTCCCAACCCTCGCACTTCCTCCTATCCAAGCCTCTCCTCTTCCCTCCCTCCTCTCGCTTCGCCGCTTCCCGCAAATGCAACTTCCGTTCTCTCCTCTCCGGCAAGAACGGTCGCCGGTCCGGCATCAGAGCTGCCGTGGATTCACCGGAATTGTCGGAGTCCGTCGTCGCCGACGGTGGTGGCCCGCAACAGTATTCCGTGAAGATTCCCGTTGGTGATAGACATATTTTGGTTGAGACTGGTCATATAGGAAGACAGGCAAGTGGCTCTGTTACAGTAACAGATGGAGAGACTATTGTGTACGCAACTGTTTGCTTGGATGATGTTCCTAGTGAACCATCTGACTTTTTCCCTCTTTCTGTTAATTATCAAGAGCGTTTTTCAGCAGCTGGTCGCACTAGtGGAGGTTTTTATAAGCGAGAAGGAAAGACAAAAGATCACGAGGTTCTTATTTGTAGGTTGATTGATAGGCCTCTACGTCCTATGATGCCAAAGGGCTTCTATCATGAAACTCAAATATTATCTTGGGTTTTGAGTTACGATGGATTACACTCCCCTGATTCTTTGGCTGTCACTGCAGCTGGTATAGCAGTTGCACTTTCAGAATTGCCAATGTCAAAAGCAGTTGCTGGAGTTCGTGTTGGTCTTGTTGGCGATAAGTATATAGTAAATCCTACAACTGAGGAGATGGAACACTCTGAGTTGGACCTCATACTAGCCGGCACAGATAGTGCAATATTGATGATAGAGGGCTATAGCAATTTTCTTCCAGAAGAGAAGTTACTTAAAGCTGTAGAAGTTGGTCAGGATGCAGTGCGAGCAATCTGTAATGAGGTAGAAGCTGTGGTTAAGAAGTGTGGGAAGCCAAAGATGTTGGATGCCATCAAGTTGCCTCCTCCCAAACTTTATGAGCATGTTGAAGTTGTCAAAGGCATAAGGCGCCCTTAA 1002 0.4711 MLACTSSSLHGLAALQRHSQPSHFLLSKPLLFPPSSRFAASRKCNFRSLLSGKNGRRSGIRAAVDSPELSESVVADGGGPQQYSVKIPVGDRHILVETGHIGRQASGSVTVTDGETIVYATVCLDDVPSEPSDFFPLSVNYQERFSAAGRTSGGFYKREGKTKDHEVLICRLIDRPLRPMMPKGFYHETQILSWVLSYDGLHSPDSLAVTAAGIAVALSELPMSKAVAGVRVGLVGDKYIVNPTTEEMEHSELDLILAGTDSAILMIEGYSNFLPEEKLLKAVEVGQDAVRAICNEVEAVVKKCGKPKMLDAIKLPPPKLYEHVEVVKGIRRP 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1721 333 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, CHLOROPLASTIC 61 328 - -
Ssu4g1721 333 CDD RNase_PH_PNPase_1 83 309 - -
Ssu4g1721 333 SUPERFAMILY Ribonuclease PH domain 2-like 224 309 IPR036345 -
Ssu4g1721 333 SUPERFAMILY Ribosomal protein S5 domain 2-like 85 222 IPR020568 -
Ssu4g1721 333 Pfam 3' exoribonuclease family, domain 1 92 222 IPR001247 -
Ssu4g1721 333 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 61 328 IPR012162 GO:0003723|GO:0004654|GO:0006402
Ssu4g1721 333 Pfam 3' exoribonuclease family, domain 2 226 288 IPR015847 -
Ssu4g1721 333 Gene3D - 75 307 IPR027408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1721 Ssu-Chr4 30499401 30511408 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1721 K00962 - gmx:100819741 581.637