Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1715 ATGGCCATGTTGAACAACTTTAATACCACCGCACAACAACAGATCAACCAAATCCAAGCGCAAGTTCCACAGCGCAGGCTTCCATTGACATACCCCATCAagGCACAAGATTCAAGCTTTCCCAACAGAACAACAGTGGCGGGTCAAACAGCAAGAAGGGTCTTCCAGATTCTCTTCTACTTGCATTTGTTCCTAGGTGCAGTCTTGGTGACTtttcttaccatatatggtCTTGTCTCTGACTCTCACACCCGCCATTTCCACCCCCAGAGGTGGTACCCCCCACTTCTAGCATCAACAGCAAGTGCTGGAATTGTTGGTTTCGCATGGCAATGGATCACTGCACGCCACTCCACGAGGGTGGTCAGGTTAGCATTTTGGCTGACTCCCCTGCTAACATGTGCAATGGGAATTATGTTTGTGTGCATTGGCTCTGCAGTGAGTCTGGCAGTTGGTGTAATTGCTTTGGTTTGTGCATTAATTCAATCCCTCTATGGTTGTTGGGTCAGTCCCAGATTCGAATATGCCACCAGAATCTTGTCAGTTTCAATAGCTTTTCCTCCTAACAAAACCAAGGAGTTAACCCTTTCTTCAATCCTCATTGGTATCCTTTACTGCTGTTTCCTGGTGGCTGGGATTGGGGGAGCTAGAGCTATTGAAAACAGGACCAAATCAGCAGCCTTTTTCATCTTGTTGATCTTGCTGAGCCTAGGATGGACCATGCAGTTTCTGAAGAATGCAATGTATGTCACTATTTCAAGGGTAAAGTATATGCATTTTTCTGGAGGAGTTGACATGGACACTAGAGTGGCATTTTGTGACACAATCAAGCACTTAACTGGATGTGTTTCCATGGGCTCCATCCTTGTTCCCATCATCGTGGTCTTCCGGGGTTTTGCACGAACCACGAGTCTGGTTGGAGGAGATACAGATGAGTTCATGTTTTCCTGTGTTAGTTGCTATATGGGGATTGCATCTCTTCTTGTGATCCGCGGGAACCGGTGGGGTTTTGTGCACGTTGGAGTTTATAACAAAGGGTTTGTGCAGGCATCTTCTGATACTTGGGAGATGTTCATTAGAGTTGGATTGGAGCAACTCATAGACTTGGATCTCACTGGGGCCTACTGTTTCCTTAGTGGGGTTGCAACAGGTGCAATCTGTAGTCTAGTGAGTGGAATTTGGAGTATTGTAATTCACAAGGGCTATGCCACAGAAGTGTCCATTTATGCTTTCCTCATTGGCTATTTCATGTGTCGGGTGGCTATTGCTTGGGCACAAGCATGTGTCTCAGCTTACTATGTTGCCTACGCAGAAAATCCACAGAGCACTCAATTTGACTCCACTATTCCAGTACGCTTGGAGCAGCTTAATAGATCTCAAGCTTTGCAAATAGTCAGAGCTAATAATTTTAGCTAA 1416 0.452 MAMLNNFNTTAQQQINQIQAQVPQRRLPLTYPIKAQDSSFPNRTTVAGQTARRVFQILFYLHLFLGAVLVTFLTIYGLVSDSHTRHFHPQRWYPPLLASTASAGIVGFAWQWITARHSTRVVRLAFWLTPLLTCAMGIMFVCIGSAVSLAVGVIALVCALIQSLYGCWVSPRFEYATRILSVSIAFPPNKTKELTLSSILIGILYCCFLVAGIGGARAIENRTKSAAFFILLILLSLGWTMQFLKNAMYVTISRVKYMHFSGGVDMDTRVAFCDTIKHLTGCVSMGSILVPIIVVFRGFARTTSLVGGDTDEFMFSCVSCYMGIASLLVIRGNRWGFVHVGVYNKGFVQASSDTWEMFIRVGLEQLIDLDLTGAYCFLSGVATGAICSLVSGIWSIVIHKGYATEVSIYAFLIGYFMCRVAIAWAQACVSAYYVAYAENPQSTQFDSTIPVRLEQLNRSQALQIVRANNFS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1715 471 PANTHER F20H23.27 PROTEIN-RELATED 16 460 - -
Ssu4g1715 471 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 16 460 IPR007603 GO:0022857|GO:0055085
Ssu4g1715 471 Pfam Plasma-membrane choline transporter 153 440 IPR007603 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1715 Ssu-Chr4 30318310 30320160 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1715 - - gmx:100818674 814.683