Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1712 atgaaaaaaaattcctataaaCGTTATGCCATTGCTCCTAAAGACTTCAGTATAGAACTCTCTGCCGTAACCGCCGTCCGCTCTTCCATCGTCCTACTCTTTTGCTTTCCTCCGAACATTTCCGTTAAATTCACTATCTTAGATTTGACAATTGAGTTGAATATGATGGCAAAAGAGCACGAAAAAAATCCAACGGTAATGCCAAAAGATGAAGCATACAATAAGGATTTGGCGAATGCATCAAATGATCGATTTAAGGGCCACAAAGAAGATTTGCCTGCCTATATGCCAGAAAGTATTGggGCTACTAATGTTGAGCATGAGGCCACTAAAGATGGTAAATATGATGATTCACATAGAGAAGATGAATCAGAAACTTTCTCTGATATTGATGATCAAGATGTTGATGTGTACCTTCTTGATGAGGAGGGGAAGCATATCAAGAAGATACTGTGGGAAAGAGCAAACCAAGTGTATCTTGAGGAAATGAAACAGAGACAAGCGTATGAGGCAAAAAATTTAAGGCTAGCTCGATCTGCTGCAGAGGCTGTTGGccaaatgtttaataaaaaaaggCATTTGCAGAGTCTCAATTCTAAAGTCAATTTTGATCGCCTGGGtgaattatttaatgaactGGTAATTCTCTCTTGA 654 0.3654 MKKNSYKRYAIAPKDFSIELSAVTAVRSSIVLLFCFPPNISVKFTILDLTIELNMMAKEHEKNPTVMPKDEAYNKDLANASNDRFKGHKEDLPAYMPESIGATNVEHEATKDGKYDDSHREDESETFSDIDDQDVDVYLLDEEGKHIKKILWERANQVYLEEMKQRQAYEAKNLRLARSAAEAVGQMFNKKRHLQSLNSKVNFDRLGELFNELVILS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1712 217 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 61 210 IPR029529 GO:0000126|GO:0000995|GO:0006383
Ssu4g1712 217 Pfam Brf1-like TBP-binding domain 128 174 IPR011665 -
Ssu4g1712 217 MobiDBLite consensus disorder prediction 106 126 - -
Ssu4g1712 217 Gene3D Single helix bin 121 170 - -
Ssu4g1712 217 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 61 210 IPR000812 GO:0006352|GO:0070897
Ssu4g1712 217 MobiDBLite consensus disorder prediction 106 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1712 Ssu-Chr4 30223018 30228538 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1712 K15196 - gmx:100817609 192.971