Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1701 ATGTTGAGCCACAACATCAACAAAGTGCTCATTAGTGGGCCGAGGAAGAAAACTAGCGGCGTGGCCCCAAGGTTCCTCTTTCTCCTGGCTACTCCCTTCCCTCTTCTCCGCCACCACCACCGCAAACTCTTCCTCCTTTCTTTCCATTCCCATTCACTCCGTCTCTCTTCTTCcccttccttctctttctcttcctctccctCGCCTCTCCCACTCAAACTCAAAGCCTCCCAAAGCCACACCTCTCCCTGGCCCAAGTGGTCCTCGTTCCTCTCTCACATCTCCGCCGCCGGCTACCTCCCCTCCCTCCCCGACGACGCCTTCGCCCCCGCCGCCGGACACCTGTCCCACTCCTTCCTCCGCGACTCCTCCGCCTCCCTGGCCTTCGCGCGACACCGACCTAACCTtctcagGTTGCTCTCCGTGAGAGACATTGCGGTGGTGGTTGGGCACTGCTCCCCCTTTCTCTTCCACGATGCCGAGGATTCCCTCAGGAAGATTATGTCATTTCTGTCCAACGGTGACGCCAATGCCTTGGACACTGATAGAGCAAATACGGTTGATCTCATGAAGTTTTTGCTGAGTTATGCAAAAACTTCTGCTCTCGCTAGTTTTAATCTTGATGAATCTCAAAGCCCCCTGACTATTGATTACCGGTATGACATGAGCTTTGTTGTTTTTCATCCattatgtttttctttgattcttggaaaccataaaatgttaattttcgATTAcggttttctttttgaaattttaattttaaacttcaaAGCATTTCTGGAGTTGGGTTGGGGTTTCATAGCGGGATTTGACTATGGAGACTCAGTTGAAGTTGATGGATTTGACATAGACTATGGGAATGATGTTTTGACTGTAAAACTTGGCGATCTTGGCACCTATGTACTGAACAAACAAACACCAAATAGACAACTTTGGCTGTCTTCTCCAGTGAGTGGTCCGTCAAGGTTTGATTGGGATCGGGATACTAGAGCTTGGATTTATAGGCGGAACAAAGTAaacttgtataaaattttggaagGTGAGTTGGAGCAGTTATGTGGCAAATCTATTGTTCTGTCCTAA 1086 0.442 MLSHNINKVLISGPRKKTSGVAPRFLFLLATPFPLLRHHHRKLFLLSFHSHSLRLSSSPSFSFSSSPSPLPLKLKASQSHTSPWPKWSSFLSHISAAGYLPSLPDDAFAPAAGHLSHSFLRDSSASLAFARHRPNLLRLLSVRDIAVVVGHCSPFLFHDAEDSLRKIMSFLSNGDANALDTDRANTVDLMKFLLSYAKTSALASFNLDESQSPLTIDYRYDMSFVVFHPLCFSLILGNHKMLIFDYGFLFEILILNFKAFLELGWGFIAGFDYGDSVEVDGFDIDYGNDVLTVKLGDLGTYVLNKQTPNRQLWLSSPVSGPSRFDWDRDTRAWIYRRNKVNLYKILEGELEQLCGKSIVLS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1701 361 SUPERFAMILY Frataxin/Nqo15-like 273 357 IPR036524 GO:0008199|GO:0016226
Ssu4g1701 361 TIGRFAM mito_frataxin: frataxin 278 351 IPR017789 GO:0004322|GO:0005739
Ssu4g1701 361 PANTHER FRATAXIN 272 359 IPR002908 GO:0008199|GO:0016226
Ssu4g1701 361 SMART Frataxin_Cyay_2 255 361 IPR002908 GO:0008199|GO:0016226
Ssu4g1701 361 TIGRFAM FeS_CyaY: iron donor protein CyaY 282 359 IPR002908 GO:0008199|GO:0016226
Ssu4g1701 361 ProSitePatterns Frataxin family signature. 302 316 IPR020895 -
Ssu4g1701 361 Pfam Frataxin-like domain 275 357 IPR002908 GO:0008199|GO:0016226
Ssu4g1701 361 ProSiteProfiles Frataxin family profile. 241 358 IPR002908 GO:0008199|GO:0016226
Ssu4g1701 361 PRINTS Frataxin signature 288 303 IPR002908 GO:0008199|GO:0016226
Ssu4g1701 361 PRINTS Frataxin signature 303 318 IPR002908 GO:0008199|GO:0016226
Ssu4g1701 361 Gene3D Frataxin/CyaY 268 361 IPR036524 GO:0008199|GO:0016226
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1701 Ssu-Chr4 29923166 29929699 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1701 K19054 - gmx:100792849 199.519