Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1700 ATGGGTGGCGTGGCCCCAAGGTTCCTCTTCCTCCTAGCTACTCCCTTCCCTCTTCTCCGCCACCACCACCGCAAActcttcctcctttcttccCATTCCCGCTCGCTCCATCTCTCTTCTTCCCCttccctctctttctctttctctttctctttctcttcctctccctCGCCTCTCCCACTCAAACTCAAAGCCTCCCAAAGCCACCCTCACAGCCACACCTCTCCCTGGCCCGAGTGGTCCTCATTCCTCTCTCACATCTCCGCCGCCGGCTACCTTCCCTCCCTCCCCGACGACGCCTTCGCCCCCGCCGCCGCCGCCGGACACCTGTCCCACTCCTTCCTCCGCGACGCCTCCGCCTGCCTGGCCTTCGCGCGTGACCGACCTAACCTTCTcagGTTGCTCTCCGTGAGAGACATTGCGGTGGTGGTTGGGCACTGCTCCCCCTCTCTCTTCCGCGACGCCGAGGATTCCGTCGGGAAGATGAAGTCATTTCTGTCCAACGGTGACGCCAATGCCTTGGACACTGATAGAGCAAATACGGTTGATCTAATGAAGTTTTTGCTGAGTTATGCAAGTAACCCCTTTGTCTCTTCAGAAGAGAACAGTCTTAATAAAAGAGATCTTGTTGAATCATCTGTTAGAAATCTCTTTGGTGAACTTTTTAAGCTGAGTTACAGTGCACCTGGACCTAACTCTTTTGATTCAGTGCCTAGTCAAATGGCTGGCAGATTTGGACAGACAAAGCCTCCTggacaaaaaattgaaatgaagaGGGGTGATTGGATTTGCCCTAGGtgtaatttcatgaattttgcaaGAAACATCAAATGTCTTGAGTGTGAGGAAGCAAGGCCAAAAAGACAACTGGCTGGAGGTGAATGGGAATGTCCTCAGTGTGATTTCTATAACTATGGGAGGAATATGACTTGCTTAAGGTGTGACTGCAAGCGACCTGGACAAATATCTTTGGGTGCCACCAATACCATGTCACATATGGGGTACGAAAATGGAAACAATCCTAATACTTCAGAGGTTGATGCTAGGTTAGTTGCTAATGAAGAAAAGGCACAGCGTTGGTTTAGCAAGGTTGCTCAACTAGACAGCAGTGCTGATATTAACAGTGTGATAGCAGATGAAGATTTTCCTGAAATAATGCCATTGAGGAAAGGAGTGAATCGATTTGTCGTGAGCACAAGGAAAACTCCATTGGAGAGGAGGTTGGCTAATGCTCAATACAAGAGAAACTTGTCCAATAATGACACTCCCGGGATTGAGGATTCCAAAGCTTGGGAACCAATGAAGTCCCGTGATACTCTGGATGATGTTCTAGTTCGTTCAGCTGGCCTTCCTCAATCTGACAATAAGAACATTGTTGCTGAACAAAATGCCAGTGGCGACAACTCACCTGCATTTGCTAGCAATACTTCACAAAAGTCTGCAGATGCACTTGCCCAAAAGTCTGAGAACTTGCTAGCAGAGGAGAGCAAGAAGATGGTATTAGACACTGATGTTGGGTATGCTAGTTCAGGAAACAGTTCACAACTTTCTAATAATTCTACAAGCGAAAATATCATAGAGGATAAGGAGAAAGAGCAAGCTGAAAAATCTGAGAGGTGGTTTAGAAAGGTTGCTGAGCTGAATGATTTTCCAGATATAACAAGTGCAATATCTGATGAGGATTTCCCTGAAATAATGCCCATGCGGAAAGGAGAAAATCGATTTGTTGTTAGCAAGAAAAAGGATCGTTCTTTGACAACACCAGCGTATAAGAGACGTGTGGCCATGGAGCAATCTAGCAAAACCAATTTTGTCCCCTTTGTCCCCTTCCCCCCAGATTACTTTGCCAAAAAGGACAAGAAGCAGGCAGATGGAACAGATTCAACGGTGGCAGATGAAGCAGATTCAACGGACCTATCCGATGATGATACATCTTCCATATCTGAGGTGGCAGAGAAACCTCCAGAGATGTCAGATGATGCAAGAGGTAGACCTAGACAGATTCCTCAATCTTCTGAACAGGGCTCAAATAACAATGATGTTGGTTCTATGTATGGGGCAACAACCAGTGGAAATTCAAGGCAGAGTTTCAATCAAGATCATGTTCCAAATTTGACAGGTAGTTCATCCCCAGGTCCAGCATCTAAGAACCAGAGTGTTGGAGCAGAGTGGAAAGGGAAGAGTTTGGAGGGGTCAGCCGTGAAGGAACCAGATCCTTTGGACATGTCAGAGGAGGCAAAGGCGGAGAGGTGGTTCCGGCGTGTCGCACAGATTAAGGATATTTCTGAGCTCAGTCAGATTCCAGATGAAGATTTTCCATCAATAATGCCTATGCGCAAAGGGGTGAACAGATTTGTTGTAAGCAAGAGGAAAACGCCATTGGAAAGGAGATTGACATCTCAGCAGTACCGCAGAAATCTTCCAACTGTGAGCTCAGAtcctattaaaaaagaaaatgaaggtaGCTGA 2469 0.4488 MGGVAPRFLFLLATPFPLLRHHHRKLFLLSSHSRSLHLSSSPSLSFSFSFSFSSSPSPLPLKLKASQSHPHSHTSPWPEWSSFLSHISAAGYLPSLPDDAFAPAAAAGHLSHSFLRDASACLAFARDRPNLLRLLSVRDIAVVVGHCSPSLFRDAEDSVGKMKSFLSNGDANALDTDRANTVDLMKFLLSYASNPFVSSEENSLNKRDLVESSVRNLFGELFKLSYSAPGPNSFDSVPSQMAGRFGQTKPPGQKIEMKRGDWICPRCNFMNFARNIKCLECEEARPKRQLAGGEWECPQCDFYNYGRNMTCLRCDCKRPGQISLGATNTMSHMGYENGNNPNTSEVDARLVANEEKAQRWFSKVAQLDSSADINSVIADEDFPEIMPLRKGVNRFVVSTRKTPLERRLANAQYKRNLSNNDTPGIEDSKAWEPMKSRDTLDDVLVRSAGLPQSDNKNIVAEQNASGDNSPAFASNTSQKSADALAQKSENLLAEESKKMVLDTDVGYASSGNSSQLSNNSTSENIIEDKEKEQAEKSERWFRKVAELNDFPDITSAISDEDFPEIMPMRKGENRFVVSKKKDRSLTTPAYKRRVAMEQSSKTNFVPFVPFPPDYFAKKDKKQADGTDSTVADEADSTDLSDDDTSSISEVAEKPPEMSDDARGRPRQIPQSSEQGSNNNDVGSMYGATTSGNSRQSFNQDHVPNLTGSSSPGPASKNQSVGAEWKGKSLEGSAVKEPDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQQYRRNLPTVSSDPIKKENEGS 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1700 822 MobiDBLite consensus disorder prediction 793 822 - -
Ssu4g1700 822 ProSiteProfiles Zinc finger RanBP2 type profile. 258 287 IPR001876 -
Ssu4g1700 822 SUPERFAMILY Ran binding protein zinc finger-like 252 287 IPR036443 -
Ssu4g1700 822 Pfam Zn-finger in Ran binding protein and others 293 319 IPR001876 -
Ssu4g1700 822 Pfam Zn-finger in Ran binding protein and others 259 286 IPR001876 -
Ssu4g1700 822 ProSiteProfiles Zinc finger RanBP2 type profile. 291 320 IPR001876 -
Ssu4g1700 822 MobiDBLite consensus disorder prediction 505 533 - -
Ssu4g1700 822 MobiDBLite consensus disorder prediction 729 743 - -
Ssu4g1700 822 MobiDBLite consensus disorder prediction 646 663 - -
Ssu4g1700 822 MobiDBLite consensus disorder prediction 613 743 - -
Ssu4g1700 822 Gene3D - 289 321 - -
Ssu4g1700 822 Gene3D - 251 288 - -
Ssu4g1700 822 PANTHER ZINC FINGER PROTEIN 3 822 - -
Ssu4g1700 822 PANTHER ZINC FINGER PROTEIN VAR3, CHLOROPLASTIC 3 822 - -
Ssu4g1700 822 MobiDBLite consensus disorder prediction 506 523 - -
Ssu4g1700 822 ProSitePatterns Zinc finger RanBP2-type signature. 262 281 IPR001876 -
Ssu4g1700 822 MobiDBLite consensus disorder prediction 614 628 - -
Ssu4g1700 822 SMART zf_4 293 317 IPR001876 -
Ssu4g1700 822 SMART zf_4 260 284 IPR001876 -
Ssu4g1700 822 MobiDBLite consensus disorder prediction 665 717 - -
Ssu4g1700 822 MobiDBLite consensus disorder prediction 799 816 - -
Ssu4g1700 822 ProSitePatterns Zinc finger RanBP2-type signature. 295 314 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1700 Ssu-Chr4 29916079 29920420 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1700 76 324 EF-hand Containing Proteins AT1G55040 35.052 1.91e-42 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1700 - - gmx:100792849 1254.97