Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1692 ATGGAGTCGAGCGTTCTGGAATGCCTGGGCGTGGAAATAATCGGCGTGATGAGTCCCGTCTCGATCTGCATGTTCCTCGTCGTCCTCCTGGTCTACACCCTCTCCTCTCCGGGCCCCGCCGTCCGCACCGCCGCCAACCTGTTCTACGCCGAGGACCCCTCCGACACCGCCGCGCAGAAGCTCGAAGGCGCTCTCCTGAACGCCGCCGTGTTCGTCGTCCTCATCGCGCTGGTCACGTTCCTCCTCGTGCTCCTCTACTACTACAACTGCACCGCGTTCCTCCGCCACTACACGCGCTTCTCCGCCTTCTTCGTCCTCGCCTCCATGGGCGGCTCCATCCTCCTCTCCCTCCTCCAGCGCTTCTCCGTCCCCCTCGACGCCGTCACCGcgctcctcctcctcctcaacTTCACCGTCGTCGGCGTCCTCTCCGTCTTCGCTGGCGGGATCCCGATCCTGCTCCGCCAGGGGTACATGGTCTGCCTCGGCATCATCGTCGCCGCGTGGTTCACCAAGCTGCCGGAGTGGACCACGTGGGCGCTCCTCGTCGCGCTCGCGCTTTACGATCTCGTCGCGGTTCTCGCTCCCGGCGGCCCGCTCAAGCTGCTCGTCGACCTGGCGTCGAGCCGGAACGAGGAGCTCCCGGCGTTGGTCTACGAGGCGCGTCCCACGGTGCCCACCCGCGGGGGTTCCGCGTTAGGGTTTTTGGTTGCCGGTGTTTCGGATTCGGAAGCTTCTAGAATTGAGCTTCAGGTAGTGTCTagggataataataataataataataatgatgatgtaATTAGGAACAGGGACAATGATAACGACACCGAGGGTGACACGGAAGGGGAAAGGTCGCCGTTGGTTGGCGGAATGAGGTTTGGTGAGGGTGTTGTTGATGAGGAGATGGCACCACTTGTGGAGACGAATAGGGTTGGGGATGGTGAGGAAGGGATGAGGGGGGAGGTTGGGGATAGGGGATTAAGCTTGGTCTTGGGGACTTTGTTTTCTACAGTGTTCTTGTGGGGAGAGCGGCCATGTATGATTTGA 1047 0.5874 MESSVLECLGVEIIGVMSPVSICMFLVVLLVYTLSSPGPAVRTAANLFYAEDPSDTAAQKLEGALLNAAVFVVLIALVTFLLVLLYYYNCTAFLRHYTRFSAFFVLASMGGSILLSLLQRFSVPLDAVTALLLLLNFTVVGVLSVFAGGIPILLRQGYMVCLGIIVAAWFTKLPEWTTWALLVALALYDLVAVLAPGGPLKLLVDLASSRNEELPALVYEARPTVPTRGGSALGFLVAGVSDSEASRIELQVVSRDNNNNNNNDDVIRNRDNDNDTEGDTEGERSPLVGGMRFGEGVVDEEMAPLVETNRVGDGEEGMRGEVGDRGLSLVLGTLFSTVFLWGERPCMI 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1692 348 MobiDBLite consensus disorder prediction 253 290 - -
Ssu4g1692 348 PANTHER PRESENILIN 1 280 - -
Ssu4g1692 348 MobiDBLite consensus disorder prediction 266 282 - -
Ssu4g1692 348 Pfam Presenilin 11 275 IPR001108 GO:0004190|GO:0016021|GO:0016485
Ssu4g1692 348 SMART psh_8 62 347 IPR006639 GO:0004190|GO:0016021
Ssu4g1692 348 PRINTS Presenilin family signature 189 206 IPR001108 GO:0004190|GO:0016021|GO:0016485
Ssu4g1692 348 PRINTS Presenilin family signature 172 179 IPR001108 GO:0004190|GO:0016021|GO:0016485
Ssu4g1692 348 PRINTS Presenilin family signature 17 27 IPR001108 GO:0004190|GO:0016021|GO:0016485
Ssu4g1692 348 PANTHER PRESENILIN 1 280 IPR001108 GO:0004190|GO:0016021|GO:0016485
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1692 Ssu-Chr4 29802479 29803525 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1692 1 332 Miscellaneous Gene Families AT1G08700 57.909 6.67e-132 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1692 K04505 - gmx:100819461 407.912