Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1688 ATGGCCACTGTTCTCAGAACTCCCACCTTCCGGCCTCCGCCGCGCGCCGCCAATTCCCCGAAACCCTCGCGCGTCGCCGTTGCGTCTTTCAGACCAAACACTAGCTGCAGGAGAAAACCCTCATTCCTCTCCTCCCTGCGGTTCCCCACCGTTCCCTCTCTACGGTTCGTCAAGTTCGTTCCCTTCGCTTTCGACGGCGATGCCCCGCAAGTTCAGGAACCGGAGCTTCAGGTTCTGGACCCTTCAGATGGTGCTGTTGGTATAAAGGACAGTGCAAGTGATAATGAGGTTAGTGATGCTGGTGAAAGTGAAACATCTGCTTCACCTTTCTTAGTGTTACTTCAGTCGTACAAAGAAGCATTAGCTAATAATGATGAAGTCAAAATTGCTGAGTTGGAATCATCATTAAAATCCCTTGAAGACGAGAAAATAGAACTTGAAGGGAAAATAGCTTCTTTATATGAAGAGTTATCAATAGAAAAGGATCGGATTCTAAGGATTAGTGCAGACTTTGACAATTTTCGGAAGAGGACAGAGAGAGATCGCCTTTCACTGGTCTCAAATGCTCAGGGTGAAGTTGTGGAGAGTTTGTTGCCTGTATTGGATAACTTTGAGAGAGCAAAGGCCCAGATTAAGGTGGAGACAGAGGGAGAGGAGAAAATAAACAACAGCTATCAGAGCATATATAAACAGTTCATTGAAATTCTAACCTCACTTGGAGTTGAACCAGTGGAGACAGTTGGAACACCCTTTGATCCATTGCTACATGAAGCAATTATGCGTGAGGATTCTGCTGAATTTGAGGATGGCATCATAATTCAAGAATTCAGAAAGGGTTTTAAACTTGGTGACCGTCTTTTGCGTCCATCAATGGTGAAGGTATCAGCTGGTCCTGGACCTGCAAAGCCTGAACAAGAAGCACCGCAAGAAGAACAAGTCAACACTGAAATTTCTGAggacaataaagaaaatgaggGCAGCACAGAAACAGAGTCAGCTTGA 1002 0.4481 MATVLRTPTFRPPPRAANSPKPSRVAVASFRPNTSCRRKPSFLSSLRFPTVPSLRFVKFVPFAFDGDAPQVQEPELQVLDPSDGAVGIKDSASDNEVSDAGESETSASPFLVLLQSYKEALANNDEVKIAELESSLKSLEDEKIELEGKIASLYEELSIEKDRILRISADFDNFRKRTERDRLSLVSNAQGEVVESLLPVLDNFERAKAQIKVETEGEEKINNSYQSIYKQFIEILTSLGVEPVETVGTPFDPLLHEAIMREDSAEFEDGIIIQEFRKGFKLGDRLLRPSMVKVSAGPGPAKPEQEAPQEEQVNTEISEDNKENEGSTETESA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1688 333 ProSitePatterns grpE protein signature. 251 294 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu4g1688 333 MobiDBLite consensus disorder prediction 291 333 - -
Ssu4g1688 333 CDD GrpE 161 294 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu4g1688 333 Hamap Protein GrpE [grpE]. 93 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu4g1688 333 PANTHER GRPE PROTEIN 16 312 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu4g1688 333 MobiDBLite consensus disorder prediction 81 103 - -
Ssu4g1688 333 PRINTS GrpE protein signature 193 208 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu4g1688 333 PRINTS GrpE protein signature 165 181 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu4g1688 333 PRINTS GrpE protein signature 248 263 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu4g1688 333 PRINTS GrpE protein signature 275 294 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu4g1688 333 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 145 240 IPR013805 -
Ssu4g1688 333 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 241 297 IPR009012 GO:0006457
Ssu4g1688 333 MobiDBLite consensus disorder prediction 1 24 - -
Ssu4g1688 333 Coils Coil 122 156 - -
Ssu4g1688 333 PANTHER GRPE PROTEIN HOMOLOG 16 312 - -
Ssu4g1688 333 MobiDBLite consensus disorder prediction 315 333 - -
Ssu4g1688 333 Pfam GrpE 133 295 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu4g1688 333 Gene3D - 122 238 IPR013805 -
Ssu4g1688 333 Gene3D Head domain of nucleotide exchange factor GrpE 240 295 IPR009012 GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1688 Ssu-Chr4 29732414 29737526 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1688 K03687 - gmx:100820521 538.88