Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1633 ATGAGCCTCTTGTGTATCCCTGGACGCAGGATCTTCCCACCGACGCCCTCACCCTTCGCCCTCTTCATCCAGCGGCGATGGAAGAAACCCACCGTTTCCGCCCAAACCCGTTTGGAGGACAGGGTGAGAGACCCCCACCTCGACAACCTCATGACCCACCTCAAAAAACTCTACCTTGTCCTCAAAATCCACCGCCTCATGTCCACCCGCAAGCGCGGTCCCTTCGCGTCCCTCAACCTCACGTCCCGCTGGAGAAACATCCTCGGACTCAACGTCCCCGTCGCCTCCTTCCTCCGCAAGCACCCGCACGTTTTCCACGTGTTCGTGCACCCTTTGAGGAGGAACACGTGTTGCAGGACCACAAAAAAGATGAAGGAGTTGATCTCGCTTGAAGGGGTTGTGGCGAAGCAGCAGGAGGTGGAGGCTGTGAAGAGGGTGAAGAAGCTGTTGATGATGTCCGTGAACGGCACTCTTCGTTTGCATGCTTTGAGGTTGATCAGAAGAGAACTGGGTCTCCCCGAGGATTTCAGAGACTCCATTCTTGGGAAGTACAGCGGGGAATTCAGATTGGTTGATTTGGAGGTTGTGGCGTTGGTTGATCGGGATGCTGAATTGGGAGTGGCTCAGGTTGAGAAATGGAGGGAGAGAGAGTACACGGAGAAGTGGTTGAGTGAGTTTGAGACGAGGTTTGCATTTCCCGTCAGTTTCCCAACTGGGTTCAAGATTGAGAGAGGGTTTAGAGAGAGGTTGAAGAATTGGCAAAGGCTTCCTTACACTAAGCCTTACGAGAGGAAGGAGGTCGTTCGGGTGAAGACGTGTGGAGGGATCGAGCGATATGAGAAGAGGGCTGTGGCTGTTCTTCACGAGCTGTTGAGCTTGACTGTGGAGAAAATGGTTGAGGTTGATCAACTGGCTCATTTTCGGAGGGACTTTGGTATTGAAGTTAATGTGCGCGAGTTACTGCTAAGGCACCCCGGTATATTTTACATATCTACTAAAGGGAAGACTCTAACTGTTTTTCTTAGGGAGGCATACAGCAAAGGGGGTTTGATTGAGCCGAATCCCGTGTATGAGGCTCGTAGGAATATGTTGGATCTTGTGTTGTTGGGGTGTAGGAAAACCAGACAATTGTTAGCTTGTGATGTGTCTGAGGAAGAGAGTAATACTGTAGTCTGTGAAGTGGATGAGGAAGGTGAAAGACAAGGGGATTGGGTGATTCCTTTCTTGGAGAATTGTGAGGAGAATAGATCCCCTTGA 1257 0.5107 MSLLCIPGRRIFPPTPSPFALFIQRRWKKPTVSAQTRLEDRVRDPHLDNLMTHLKKLYLVLKIHRLMSTRKRGPFASLNLTSRWRNILGLNVPVASFLRKHPHVFHVFVHPLRRNTCCRTTKKMKELISLEGVVAKQQEVEAVKRVKKLLMMSVNGTLRLHALRLIRRELGLPEDFRDSILGKYSGEFRLVDLEVVALVDRDAELGVAQVEKWREREYTEKWLSEFETRFAFPVSFPTGFKIERGFRERLKNWQRLPYTKPYERKEVVRVKTCGGIERYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFGIEVNVRELLLRHPGIFYISTKGKTLTVFLREAYSKGGLIEPNPVYEARRNMLDLVLLGCRKTRQLLACDVSEEESNTVVCEVDEEGERQGDWVIPFLENCEENRSP 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1633 418 Pfam Plant organelle RNA recognition domain 42 371 IPR021099 GO:0003723
Ssu4g1633 418 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN 17 415 - -
Ssu4g1633 418 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 17 415 IPR045040 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1633 Ssu-Chr4 28379982 28381238 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1633 - - gmx:100789857 721.465