Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu4g1630 | ATGACTGCTCAGACCCAAGAGGAGCTTCTCGCGGCACACCTCGAACAACAAAAGATCCATCATGATGAGCCTGTAGTTGAGGATGATGACGATGAGGAagaggatgatgatgatgacgacgaCGATGATGACCATGCCGAAGGACTAGAAGGTGATGCATCTGGTAGGTCCAAGCAGACCAGAAGTGAAAAGAAGAGTCGCAAGGCAATGCTTAAACTTGGAATGAAACCTGTCACAGGTGTCAGTCGAGTGACAGTCAAGAAGAGCAAGAATATACTGTTTGTTATCTCAAAACCAGACGTTTTCAAGAGCCCAACTTCTGATACGTACATTATATTTGGGGAAGCTAAGATTGAAGATTTGAGCTCACAGCTACAAACTCAGGCAGCGGAGCAATTCAAGGCTCCTAATTTGAGCAATGTGGGATTGAAGCCTGAATCCTCTGCTATTGCTCAAGATGATGAGGAAGTGGATGAGACTGGTGTAGATCCCAAGGACATAGAGTTGGTTATCACTCAAGCTGGTGTGTCAAGACCTAAAGCTGTTAAAGCTCTCAAGGCAGCCGGTGGCGACATTGTTGCTGCCATTATGGAGCTAACTAATTGA | 606 | 0.4389 | MTAQTQEELLAAHLEQQKIHHDEPVVEDDDDEEEDDDDDDDDDDHAEGLEGDASGRSKQTRSEKKSRKAMLKLGMKPVTGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIIFGEAKIEDLSSQLQTQAAEQFKAPNLSNVGLKPESSAIAQDDEEVDETGVDPKDIELVITQAGVSRPKAVKALKAAGGDIVAAIMELTN | 201 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu4g1630 | 201 | PANTHER | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN | 3 | 201 | - | - | |
| Ssu4g1630 | 201 | CDD | UBA_NACA_NACP1 | 155 | 200 | - | - | |
| Ssu4g1630 | 201 | PANTHER | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED | 3 | 201 | IPR016641 | GO:0005854 | |
| Ssu4g1630 | 201 | MobiDBLite | consensus disorder prediction | 26 | 48 | - | - | |
| Ssu4g1630 | 201 | MobiDBLite | consensus disorder prediction | 12 | 71 | - | - | |
| Ssu4g1630 | 201 | Pfam | NAC domain | 63 | 118 | IPR002715 | - | |
| Ssu4g1630 | 201 | ProSiteProfiles | NAC A/B domain profile. | 60 | 125 | IPR002715 | - | |
| Ssu4g1630 | 201 | MobiDBLite | consensus disorder prediction | 49 | 70 | - | - | |
| Ssu4g1630 | 201 | Pfam | HYPK UBA domain | 161 | 200 | IPR044034 | - | |
| Ssu4g1630 | 201 | Gene3D | - | 162 | 199 | - | - | |
| Ssu4g1630 | 201 | SMART | NAC_2 | 63 | 119 | IPR002715 | - | |
| Ssu4g1630 | 201 | Gene3D | - | 69 | 122 | IPR038187 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu4g1630 | Ssu-Chr4 | 28289285 | 28291709 | Dispersed/Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu4g1630 | K03626 | - | gmx:100791967 | 336.265 |