Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1629 ATGACTGCTGAGACCCAAGAGGAGCTTCTTGCGGCGCACCTCGAACAGCAAAAGATCCATGATGATGAGCCTGTAGttgaggatgatgatgatgatgaggaagaCGATGATGAAGATGAGGATGATGACAATGCTGAAGGTCAAGAAGGTGATGCATCTGGTAGGTCCAAGCAGACCAGAAGTGAAAAGAAGAGTCGCAAGGCAATGCTTAAACTTGGAATGAAACCTGTCACAGGTGTCAGTCGAGTGACAGTCAAGAAGAGCAAGAATATCCTGTTTGTTATCTCAAAACCAGATGTTTTCAAGAGCCCAACTTCTGACACATACATTATATTCGGGGAAGCTAAGATTGAAGACTTGAGCTCACAGCTACAAACTCAGGCAGCAGAGCAATTCAAGGCTCCAAATTTGAGCAATGTGGGAGTGAAGCCTGAATCCTCTGCTATTGCTCAAGATGATGAGGAAGTGGACGAGACTGATGTAGATCCCAAGGATATAGAGTTGGTGATGACTCAAGCTGGTGTGGTAAGATCAAGAGCTGTTAAGGCTCTCAAAGCTGCCAATGGCGACATTGTTGCTGCCATTATGGAGCTAACTAATTGA 603 0.4328 MTAETQEELLAAHLEQQKIHDDEPVVEDDDDDEEDDDEDEDDDNAEGQEGDASGRSKQTRSEKKSRKAMLKLGMKPVTGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIIFGEAKIEDLSSQLQTQAAEQFKAPNLSNVGVKPESSAIAQDDEEVDETDVDPKDIELVMTQAGVVRSRAVKALKAANGDIVAAIMELTN 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1629 200 MobiDBLite consensus disorder prediction 48 69 - -
Ssu4g1629 200 Gene3D - 160 198 - -
Ssu4g1629 200 PANTHER NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED 3 200 IPR016641 GO:0005854
Ssu4g1629 200 PANTHER NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3 200 - -
Ssu4g1629 200 MobiDBLite consensus disorder prediction 24 47 - -
Ssu4g1629 200 Gene3D - 68 121 IPR038187 -
Ssu4g1629 200 CDD UBA_NAC_euk 163 199 - -
Ssu4g1629 200 ProSiteProfiles NAC A/B domain profile. 59 124 IPR002715 -
Ssu4g1629 200 MobiDBLite consensus disorder prediction 1 71 - -
Ssu4g1629 200 SMART NAC_2 62 118 IPR002715 -
Ssu4g1629 200 Pfam HYPK UBA domain 161 199 IPR044034 -
Ssu4g1629 200 Pfam NAC domain 62 117 IPR002715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1629 Ssu-Chr4 28270309 28272239 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1629 K03626 - gmx:100791446 300.827