Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1628 ATGGCCAAAGGCGTAATCTCTGACGAAGAAGACGACGTTGAACTCGACGAGGAAGAGAGGGAACCCGTTGACGGGGACGAATTGGAAGAGGGTCGCGAAGTGGACAACGAAGacgaggaagaagaagaggAAGGGCAGGATGAATATGAAAATGATGGATTTATAGTGGATGACATTGAGGACGAAGAGGAGCAGGATGAAGAGAGAGCAGAAAGTGATGAGGAGcgacaaaagaagaaaaagaggaagaaaaaGGAGGAGTATGTCCTTGATGAAGATGATTATGAGTTGCTGGAGgacaataatatcaatattcatCGTCGgaaggAGAGCAAAAAGTTCAAGCGACTGAAAAAAGGCCGGAGGGATACTGAGGAGGAGCCCTCTGGGCTATCTGATGAGGAGGAGTTTGTTGGAAGTGGTAAAGTTGGGCGAACAGCTGAGGAGAAGCTTAAACGCAGTTTATTTGGTGATGATGAAGGAGCTCCACTTGAAGACATTGCTGAAGAGGAGGAGCAAGGAGAAGAAGAGGATGCTGACATTGGAGAAGATGATGAAATGGCTGACTTCATTGTGGACGAAGAAGAAGTTGATGAGAATGGAGCTCCTATGAGGCAGAGGAAgctgaagaaaaagaaaactaggCAGGCTCCAGGAGTCTCTTCCTCAGCTCTACAGGAAGCTCAAGAATTATTTGGTGATCCAGATGAATTGATTCTGAATCGccagaaaaatctagaaatgaGTGAATTCAGAGAGAGTAGACTTGAAGATGAATTTGAGCCTAGTGTTCTTTCTGAGAAATATATGACAGAGAAGGATGACCGGATTAGGGAGCTTGATATTCCTGAGAGAATGCAGatatcAGAGGAGAGTACTGGTGCTCCTCCGTTGGATGGAAGTAGTATAGATGAAGAGAGTCTATGGATAGTTAATCAGCTTGTAAATGGAGCAGTCCCTTGGATTTCCAAGAAGGTCTCAAACTcccaaaataatgaaaaggacGACCTACCGATCGACAAGGATGATATTATCAGATTTTTGGAACTGCATCATGTGCAAAAATTAGATATTCCTTTTCTTGCTATGTATCGGAAGGAGGAGTGCTTAAGCCTATTAAAAGACCTAGAGCAACCTGAAGCTGGGGATGAGAATTGGGATAAGAATGACAAAACACCTACTCTGAAATGGCACAAGGTACTTTGGGCTCTTCAGGACTTGGACAAGAAGTGGTTGCTTCTTCAGAAGCGGAAGAGTGCCCTCCAGTCATACTATAGTAAACGGTTTGAAGAAGAGTCCCGCCGCGTGTATGATGAAACAAGACTAAACTTGAATCGTCAATTGTTTGAATCAGTTATGAGATCGTTGAAGGAAGCAGAATCTGAGAGGGAGGTTGATGATGTTGACTCCAAGTTCAACTTGCATTTCCCACCAGGCGAAGCTGGTGTTGATGAAGGACAATACAAGAGGCCAAAAAGGAAGTCAATGTATAGCACCTTCAGTAAGGCAGGTCTATGGGAGGTTGCAAGCAGGTTCGGGTGTAGTCCTGAGCAACTTGGATTATGTCTATCTGTAGTTAAGCTGCAAGAGTTGGAAGATCCAAAGGAAACACCAGAAGAGATGGCTTCTAACTTTACATGTGCTATGTATGATACCCCTGAAGAAGTACTTAAATGTGCCAGGCACATGGCAGCTGTTGAGATAAGTTGTGAGCCTAGTATTAGGAAACATGTTCGTAGCCACTTTCTTGACCATGCAGTGGTGTCAACATGTCCTACTGCTGACGGAAATACAACAATAGATTCTTTCCATCAGTTTGCTGGGGTGAAGTGGCTGCGGGAGAAGCCTTTGTCTAAGTTTGAAGATGTGCAATGGCTCCTTGTACAGAAGGCAGAAGAGGAGAAACTCATTCAAGTTACTATTAAGCTGCCTGAGGAGTATCTTAATAAGTTAATAGACCAATTCAATGAGTATTATATTAGTGACAGTGTTAGCAGATCTGCTCAACTGTGGAATGAACAGAGGAAGTTGATACTGCATGATGCCATTTTTCGATTCCTTTTACCATCAATGGAAAAAGAGGCAAGAGGTGTCTTGGCAAGTAAAGCAAAGAATTGGTTACTTATGGAGTACGGGAAGGCGCTGTGGAATAAGGTTTCTGTGGGTCCTTATCAACAGAAGGAAAATGATCTTGGCTCAGATGATGAGGCTGCTCCTAGGGTTATGGCCTGCTGTTGGGGCCCTGGAAAGCCACAAACAACTTTTGTCATGTTAGATTCATCAGGAGAAGTGCTAGATTTGCTTTACACTGGGTCCCTTACTTTTAGGTCACAGAATGTTAATGACCAACAACGGAAGAAGAATGACCAGGAACGTGTGTTGAAGTTTATGACAGATCACCAAccacatgttgttgttttagGAGCAGTTAACTTGTCTTGCACCCGTTTGAAGGAAGATATATATGAGGTCATTTTTAAGATGGTGGAGGAAAATCCTAGAGATGTTGGGCACGAAATGGATGGGCTCAGCATTGTCTATGGAGATGAATCTCTTTCCCGTCTTTATGAAAATTCTCGAATTTCTTCTGAACAACTTCCTTCACAGCAAGGTATAGTGAGACGGGCTGTTGCTCTTGGGCGTTATCTCCAGAACCCATTGGCTATGGTTGCAACATTATGTGGACCTAGAAAGGAAATCTTGTCATGGAAACTGAGCCCTTTGGAGAGTTTTCTCAACCCAGATGATAAATTTGCAATGGTTGAGCAGGTTATGGTAGATGTGACCAATCAGGTTGGCATAGACATTAATTTAGCAATAAGTCACGAGTGGTTATTTGCTCCATTACAATTTATTTCTGGGTTAGGTCCACGGAAGGCTGCATCCTTACAGAGATCCCTTGTAAGAGCTGGTGCAATTTTTACTCGGAAGGACTTTCTGACAGAACATAAACTTGGTAAAAAGGTGTTTGTCAATGCGGTTGGTTTCTTGCGTGTCCGGCGAAGTGGGTTGGCTGCTAGCAGCAGCCAATTTATTGATTTGCTTGATGATACAAGAATTCATCCTGAATCTTATATTCTTGCACAAGAGTTGGCCAAAGATGTGTATGAAGAAGATGGCACTGGTGATgcaaatgatgatgatgatgcacTGGAGATGGCCATAGAGCACGTCAGAGACCGACCTAGTTATTTGAAGAACCTTGATGTTGAGGAATATGCTTCTCAGAAAAAACGTCAGAACAAAATACAAACTTTCTATGACATAAAAAGAGAATTGATTCAAGGTTTTCAGGATTGGCGTAAGCAATATGAAGAACCAAGTCAGGATGAGGAATTCTATATGATTTCAGGTGAGACTGAAGAGACACTTGCTGAAGGTAAAATCGTCCAAGTCACAGTTCGCAGAGTGCAAGCCCAGAAAGCAATATGTGGGCTTGAATCTGGAATGACTGGAATCCTCATGAAAGAAGACTATACAGATGACTGGAGAGATATAATTGAATTATCTGATAGGTTACATGAAGGCGACATGCTCACTTGTAAAATCAAGTCGATCCAAAAGAATAGGTATCAAGTCTTCCTTTTTTGTAAGGATAGTGAAATGAGAAGTAATCGGTTACAGAATAACCGTGACATTGACCCCTATTATCATGAGGACCGGAGCTGTTTTCAGAGCGATCAAGACAAAGCTCGGAAAGAAAAGGAGCTTGCCAAGAAGCATTTCAAGCCAAGGATGATTGTTCATCCACGCTTTCAGAACATAACTGCAGATGAAGCAATGGAGTTCTTGTCTGACAAAGATCCTGGAGAAAGTATTATCCGTCCTAGTTCACGAGGACCTTCATATCTTACTTTAACTCTTAAAATTAGTGATGGAGTATATGCCCATAAGGATATAGTTGAAGGTGGGAAGGAACACAAGGACATTACAAGCTTACTCCGAATTGGGAAGACACTAAAAATTGGAGAGGACACTTTTGAGGACTTAGATGAGGTTATGGACCGTTATGTTGATCCCTTGGTGACTCACTTAAAGGCAATGTTAAACTACCGTAAATTCCGAAAGGGTACAAAAGCAGAAGTTGATGAACTTTTGAGGATGGAGAAAGCCGAGTATCCTATGCGCATAGTCTATAGTTTTGGCATCTCCCACGAACATCCTGGCAcatttatattaacatatataagaaGTACAAATCCACACCATGAGTACATTGGGCTTTACCCAAAAGGATTCAGGTTCAGGAAAAAGATGTTTGAGGACATTGATCGGCTTGTGGCATATTTTCAGAGGCATATTGATGATCCCCAGCATGATTCGGCCCCCTCCATTAGATCTGTTGCCGCTATGGTACCAATGCGGAGCCCTGCAGCTGGTGGCTCATCAGGGGCATCTGTGGGTAGTGGATGGAGTGGTTCAAACAATGAGGGTGGCTGGAGAAGTCACTCTTATGATAGGGATCGATCATCTACTCCTGGTTCCAGAACAgGACGGGGTGAATACAGAAACAATGGGAATAGGGACGAACATCCTAGTGGAGTGCCTCGTCCATATGGTGGTGGACGAGGACGTGGTCGAGGTTCTTATAACAATAGACACAACTCCAATAATGAAAGGCAGGACTCTGGTAATGGGGGCAGATGGGGTTCTAATACAAAGGATGCGGATGATGGTTTAAGCAATTTCCCGGGGGCCAAGGTTCAAAATTCTCCTGGAAGGGAAGCTTTTCCTGGTGGTTGGGGTGGAAGTGGTGGAGGCAGTGGTTGGGGAGGAGGTGGAGCTAATAACAGTGACAATGGCGGCTGGGGACAAGGGAGTGGTGGTGCTGGTCCAAGTGATGGTGAACATGGTGGAAGCTCTGGCTGGGGAACTGGCTCCAAGAAAGCAGCTGATAACGGATGGGGGTCTGGAAATTCTGGCGGTTGGTGA 4932 0.4227 MAKGVISDEEDDVELDEEEREPVDGDELEEGREVDNEDEEEEEEGQDEYENDGFIVDDIEDEEEQDEERAESDEERQKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGRRDTEEEPSGLSDEEEFVGSGKVGRTAEEKLKRSLFGDDEGAPLEDIAEEEEQGEEEDADIGEDDEMADFIVDEEEVDENGAPMRQRKLKKKKTRQAPGVSSSALQEAQELFGDPDELILNRQKNLEMSEFRESRLEDEFEPSVLSEKYMTEKDDRIRELDIPERMQISEESTGAPPLDGSSIDEESLWIVNQLVNGAVPWISKKVSNSQNNEKDDLPIDKDDIIRFLELHHVQKLDIPFLAMYRKEECLSLLKDLEQPEAGDENWDKNDKTPTLKWHKVLWALQDLDKKWLLLQKRKSALQSYYSKRFEEESRRVYDETRLNLNRQLFESVMRSLKEAESEREVDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSMYSTFSKAGLWEVASRFGCSPEQLGLCLSVVKLQELEDPKETPEEMASNFTCAMYDTPEEVLKCARHMAAVEISCEPSIRKHVRSHFLDHAVVSTCPTADGNTTIDSFHQFAGVKWLREKPLSKFEDVQWLLVQKAEEEKLIQVTIKLPEEYLNKLIDQFNEYYISDSVSRSAQLWNEQRKLILHDAIFRFLLPSMEKEARGVLASKAKNWLLMEYGKALWNKVSVGPYQQKENDLGSDDEAAPRVMACCWGPGKPQTTFVMLDSSGEVLDLLYTGSLTFRSQNVNDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDIYEVIFKMVEENPRDVGHEMDGLSIVYGDESLSRLYENSRISSEQLPSQQGIVRRAVALGRYLQNPLAMVATLCGPRKEILSWKLSPLESFLNPDDKFAMVEQVMVDVTNQVGIDINLAISHEWLFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFLTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYILAQELAKDVYEEDGTGDANDDDDALEMAIEHVRDRPSYLKNLDVEEYASQKKRQNKIQTFYDIKRELIQGFQDWRKQYEEPSQDEEFYMISGETEETLAEGKIVQVTVRRVQAQKAICGLESGMTGILMKEDYTDDWRDIIELSDRLHEGDMLTCKIKSIQKNRYQVFLFCKDSEMRSNRLQNNRDIDPYYHEDRSCFQSDQDKARKEKELAKKHFKPRMIVHPRFQNITADEAMEFLSDKDPGESIIRPSSRGPSYLTLTLKISDGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVTHLKAMLNYRKFRKGTKAEVDELLRMEKAEYPMRIVYSFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVAYFQRHIDDPQHDSAPSIRSVAAMVPMRSPAAGGSSGASVGSGWSGSNNEGGWRSHSYDRDRSSTPGSRTGRGEYRNNGNRDEHPSGVPRPYGGGRGRGRGSYNNRHNSNNERQDSGNGGRWGSNTKDADDGLSNFPGAKVQNSPGREAFPGGWGGSGGGSGWGGGGANNSDNGGWGQGSGGAGPSDGEHGGSSGWGTGSKKAADNGWGSGNSGGW 1643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1628 1643 MobiDBLite consensus disorder prediction 9 70 - -
Ssu4g1628 1643 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 84 1641 - -
Ssu4g1628 1643 MobiDBLite consensus disorder prediction 71 91 - -
Ssu4g1628 1643 SUPERFAMILY RuvA domain 2-like 1013 1102 IPR010994 -
Ssu4g1628 1643 Pfam HHH domain 1014 1101 IPR041692 -
Ssu4g1628 1643 MobiDBLite consensus disorder prediction 1462 1480 - -
Ssu4g1628 1643 Pfam Holliday-junction resolvase-like of SPT6 738 894 IPR028231 -
Ssu4g1628 1643 MobiDBLite consensus disorder prediction 162 197 - -
Ssu4g1628 1643 Pfam SH2 domain 1216 1433 IPR035420 -
Ssu4g1628 1643 MobiDBLite consensus disorder prediction 1 92 - -
Ssu4g1628 1643 ProSiteProfiles S1 domain profile. 1127 1198 IPR003029 GO:0003676
Ssu4g1628 1643 Gene3D - 293 495 IPR023319 -
Ssu4g1628 1643 Pfam Acidic N-terminal SPT6 35 123 IPR028083 -
Ssu4g1628 1643 SUPERFAMILY RuvA domain 2-like 910 1000 IPR010994 -
Ssu4g1628 1643 SMART S1_6 1125 1198 IPR022967 -
Ssu4g1628 1643 Coils Coil 56 87 - -
Ssu4g1628 1643 Gene3D - 1120 1207 IPR012340 -
Ssu4g1628 1643 MobiDBLite consensus disorder prediction 1529 1568 - -
Ssu4g1628 1643 MobiDBLite consensus disorder prediction 138 160 - -
Ssu4g1628 1643 SUPERFAMILY SH2 domain 1252 1338 IPR036860 -
Ssu4g1628 1643 CDD SH2_Nterm_SPT6_like 1249 1337 IPR035019 -
Ssu4g1628 1643 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 84 1641 IPR017072 GO:0032968
Ssu4g1628 1643 Gene3D - 729 1119 IPR037027 GO:0006139
Ssu4g1628 1643 MobiDBLite consensus disorder prediction 112 227 - -
Ssu4g1628 1643 Pfam Helix-hairpin-helix motif 898 999 IPR032706 -
Ssu4g1628 1643 Gene3D - 496 932 IPR023323 -
Ssu4g1628 1643 SUPERFAMILY Ribonuclease H-like 739 894 IPR012337 -
Ssu4g1628 1643 PIRSF Spt6 2 1487 IPR017072 GO:0032968
Ssu4g1628 1643 Gene3D - 260 1002 - -
Ssu4g1628 1643 Gene3D - 1008 1100 IPR042066 -
Ssu4g1628 1643 SUPERFAMILY Nucleic acid-binding proteins 1122 1202 IPR012340 -
Ssu4g1628 1643 CDD SH2_Cterm_SPT6_like 1348 1434 IPR035018 -
Ssu4g1628 1643 SUPERFAMILY Tex N-terminal region-like 335 718 - -
Ssu4g1628 1643 Gene3D SH2 domain 1235 1346 IPR036860 -
Ssu4g1628 1643 MobiDBLite consensus disorder prediction 1456 1643 - -
Ssu4g1628 1643 Gene3D SH2 domain 1347 1443 IPR036860 -
Ssu4g1628 1643 SMART rnase_8s 739 857 IPR006641 GO:0006139
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1628 Ssu-Chr4 28258160 28267491 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1628 K11292 - gmx:100809136 2826.2