Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1614 ATGGCAGAGGTGTCGATGTGTAGCAGCAGCGGCTCCGAGCTGAGTCCAGACGAGGAGAGGATCATGATCAGAGACATTGCTCTCGCTGCTCAAGCTAACAGCAAAGAAGGCGACTCCTTCTTCTTAATCACTCAGagATGGTGGCAACATTGGATTGAATATGTGAACCAAGACCAGACAAACACTTCATATGATGGATCTTCCTTATCAGAACATTGTGATTTGGTCAATTCAATTGCTTTAAAGAGGCCAGCTGGTATTGATAATTCTGATTTGATAGATGATGCTGTGTCAGAGGACTCTGGTATGGGAATTGAGATTCATGATACTCTTTTAGAAGGCCGTGACTATGTATTACTTCCCCAAGAAGTTTGGAACCAATTATTTAGATGGTATGGTGGTGGACCTACATTGGCAAGGAAAGTTATTAGTTCTGGCCTTTCCCAGACTGAATTGGCAGTAGAGGTGTATCCTTTACGGCTTCAATTACTTATGTTGCCAAAAAATGATCGTTTTGCAATAAGAATAAGCAAGAAGGAAACCATTGGACAGCTTCACAAAAAATCTTGTGAAATATTTGATCTTCAGCCAGACCAAGTGTGTATTTGGGACTACTATGCCCGTCGGAAGCATGCTTTGATGAATGACATGGACAAAACTCTTGATGATGCTAATTTACAAATGGACCAAGATATTCTTGTTGAGGTCATCAACAATACAATCAACACAAGTTTTGCTCAAGAAAATGGGTCTGCACAGAGGCAATCAAATTCTGTTCTTGTGGAGCCTTCAAAATCAAGCTTATCAATTGCTGGTGGCCTATCTGCTAGCAAAGGTGCATCTAGAGGCTACAACATGGACCTTTCTTCTTCTCAGAACCTAAATTCTACGGTTAGAGATGTAGAAAACCCTTATGGAACCAGTGGTGTCACCACAAGAGGTTCATTAGGTGGTCTCACTGGGTTGCTGAATCTTGGCAATACTTGTTACATGAATAGTGCTATACAGTGCCTTGTTCATACACCGGAATTTGCTAGATACTTCAGGGAGGACTATCATCGAGAGATAAATTGGCAAAATCCATTTGGCATGGTTGGTGAACTAGCCCTAGCATTTGGTGAGCTGCTTCGAAAACTATGGGCACCTGGGCGAACACCAATTGCTCCTCGGCCTTTTAGATCAAAGCTTGTTCGCTTTGCACCTCAGTTCAGTGGGCACAATCAACATGATTCTCAGgAGCTTTTAGCATTTCTTCTGGATGGTCTTCATGAAGACTTGAATCGTGTAAAACACAAACCATATATAAGGTCTCGAGATGCTGATGGCCGACCTGATGAAGAAGTGGCCGACGAAAATTGGGCAAATCATATTTCCCGCAATGATTCCATAATTGTTGATGTATGCCAGGGACAATTCAAGTCAACTTTGGTTTGTCCAGTTTGCAATAAAGTCTCTGTCACATTTGATCCTTTTATGTACCTTTCACTGCCACTCCAGTCCACCACCAATAGGACCATGACAGTGACAGTTTTTGCTAGTGACGGAGCTGCCCTTCCATCTCCTTGTACAGTAACTGTTCCTAAGCAGGGACGATGCAGAGATCTCATCCAGGCACTTAGCAATGCTTGCTCATTGAAGCACAATGAGAGGCTTTTGCTTGTGGAGATACGAAACCATTGGATCCATAGAGATTTTGAAGATCCTCTTCTATTGTTGTCCACTATCAAAGATGATGACCATCTAGCTGCTTACAAGATTTCAAAGATAGACAAGAACACGAAGTATCTCCAGTTGATACACCGTCGAAGAGAGCaGAGTAATGACTCACACATCATATCAGGATGGAAACCATATGGAACACCTATTGTTTCATTGATTTCATGTGATGATACAGTCACAAGAGGTGATATACAAGTAATAGTTAATCGTATTCTCTTTCCTCTGCTAAGGAAAGGTGGCAATGTAGAACAAGCTACTACTTCTGAAACAAGCATCCCAAAAGCAACTTCTGATCAATGCAGTTTTACTTCTGATGATGATGCATGTGCTGCCAACATGGTGTCAAATTCATTAAGTAAGGATTCTACCAATTCAAAGGCACCACCAATGCCAACATTACCTCTTCTCTTGGTAGATGATAGCAATGCTTGCATTGATCTTTCAATGGGAGAGGAGAAAGTAGTTAAACTGTCACCATCGTCACCAAAAGTTTTAGTGTATATTGATTGGTCTCAGAAGCTTCTGGAAAAGTATGATACTCATCCACTTGAGACTTTGCCTGAAGTTTTGAAATATGGGCCTGTAACCAAGAAAGCTCGTACTGAACCTCTCTCCTTGTACACCTGCTTGGAAGCTTTTCTGTGTGAAGAACCTCTGGTGCCTGAAGAAGATATGTGGAACTGTCCTAAATGCAAAGAGAGACGACAAGCAAGCAAGAAGCTTGATTTCTGGAGGCTCCCACAGGTTTTGGTCATTCATTTGAAGAGGTTCTCATACAGCAGGTCAATGAAGCATAAACTAGAGACTTTTGTTAACTTTCCCATTCATGattttgatttaacaaattACATAGCCAACAAAAACAACTCTCGGCGTCAACTGTATGAACTGTATGCCCTTACAAATCATTATGGTAGTATGGGTAGCGGGCATTACACTGCACATATTAAGCTTTTAGATGAGAACAGGTGGTACAATTTTGATGACAGCCACATATCACCCATAAGTGAAGATGAGGTTAACACTGCTGCTGCCTATGTTCTATTTTACCGGAGGGTGAAGACCGACGATGACGCTGTTAGCAATGGGGCTTAG 2814 0.4161 MAEVSMCSSSGSELSPDEERIMIRDIALAAQANSKEGDSFFLITQRWWQHWIEYVNQDQTNTSYDGSSLSEHCDLVNSIALKRPAGIDNSDLIDDAVSEDSGMGIEIHDTLLEGRDYVLLPQEVWNQLFRWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLMLPKNDRFAIRISKKETIGQLHKKSCEIFDLQPDQVCIWDYYARRKHALMNDMDKTLDDANLQMDQDILVEVINNTINTSFAQENGSAQRQSNSVLVEPSKSSLSIAGGLSASKGASRGYNMDLSSSQNLNSTVRDVENPYGTSGVTTRGSLGGLTGLLNLGNTCYMNSAIQCLVHTPEFARYFREDYHREINWQNPFGMVGELALAFGELLRKLWAPGRTPIAPRPFRSKLVRFAPQFSGHNQHDSQELLAFLLDGLHEDLNRVKHKPYIRSRDADGRPDEEVADENWANHISRNDSIIVDVCQGQFKSTLVCPVCNKVSVTFDPFMYLSLPLQSTTNRTMTVTVFASDGAALPSPCTVTVPKQGRCRDLIQALSNACSLKHNERLLLVEIRNHWIHRDFEDPLLLLSTIKDDDHLAAYKISKIDKNTKYLQLIHRRREQSNDSHIISGWKPYGTPIVSLISCDDTVTRGDIQVIVNRILFPLLRKGGNVEQATTSETSIPKATSDQCSFTSDDDACAANMVSNSLSKDSTNSKAPPMPTLPLLLVDDSNACIDLSMGEEKVVKLSPSSPKVLVYIDWSQKLLEKYDTHPLETLPEVLKYGPVTKKARTEPLSLYTCLEAFLCEEPLVPEEDMWNCPKCKERRQASKKLDFWRLPQVLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTNYIANKNNSRRQLYELYALTNHYGSMGSGHYTAHIKLLDENRWYNFDDSHISPISEDEVNTAAAYVLFYRRVKTDDDAVSNGA 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1614 937 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 868 885 IPR018200 GO:0004843|GO:0006511
Ssu4g1614 937 Gene3D - 157 242 - -
Ssu4g1614 937 SMART dusp 33 146 IPR006615 GO:0004843
Ssu4g1614 937 Pfam DUSP domain 37 143 IPR006615 GO:0004843
Ssu4g1614 937 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 321 336 IPR018200 GO:0004843|GO:0006511
Ssu4g1614 937 ProSiteProfiles DUSP domain profile. 14 143 IPR006615 GO:0004843
Ssu4g1614 937 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 12 936 - -
Ssu4g1614 937 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 320 926 IPR028889 -
Ssu4g1614 937 Pfam Ubiquitin carboxyl-terminal hydrolase 320 923 IPR001394 GO:0004843|GO:0016579
Ssu4g1614 937 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5 12 936 - -
Ssu4g1614 937 SUPERFAMILY Cysteine proteinases 318 926 IPR038765 -
Ssu4g1614 937 Gene3D Cysteine proteinases 309 544 - -
Ssu4g1614 937 Gene3D - 6 156 IPR035927 -
Ssu4g1614 937 CDD Peptidase_C19R 770 924 - -
Ssu4g1614 937 Gene3D Cysteine proteinases 739 933 - -
Ssu4g1614 937 SUPERFAMILY DUSP-like 15 143 IPR035927 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1614 Ssu-Chr4 27818622 27837645 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1614 778 928 Miscellaneous Gene Families AT4G31670 33.766 8.79e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1614 - - gmx:100794067 1728.38