Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1613 ATGGCAAGATGGTCGAGAAAGAAGAACAGACTAACGATGAAGATCCATAATAGTAGAATGGAAATCGAACAGTCCACGATTACAGTAATTGCACCAAATTCAAAATCCTCTTGTACAAATGAATTGTGTGATAGATTTGCGAGTGCTGGTTTCAATGCGAACATGATAAGCTACCTTACTCAACAGCTGAACATGCCATTGGTATCTGCCTCCATCACGCTCACCAACTTTAGTGGAACTTCTAACTTCACTCCTCTGCTTGGTGCTTTCATTGCTGACTCTTTTGCTGGCCGATTTTGGACCATTGTTGTCGCTTCTCTCATCTATGAACTGGGATTGGTTATTATAACTGTATCAGCTATACTGCCCCATCTGCACCCCCCACCATGCCCAACTCAAGTGAACTGTCAAGAAGCCTCATCCTCGCAGCTGTGGATACTCTACATCTCTCTCTTACTCATATCACTTGGCACAGGGGGCATTAGACCTTGTGTTGTGCCCTTTTCAGCGGACCAATTTGACATGACAAAAAATGGGGTGGCATCAAGGAAGTGGAACCTCTTCAATTGGTACTTTTTCTGCATGGGACTGGCTTCTCTAAGTGCTTTGACCATTGTGGTTTACATTCAAGACAACATGGGTTGGGGATGGGGCCTTGGGATTCCAACCATTGCCATGCTGTTATCCGTCATTGCCTTTGTGTTGGGCTCACCACTCTATAAGACCGTGAAACCACACGGTAGTCCATTGGTTCGTTTGGTACAAGTAGTTGTGGCAGCTGTGAAGAAGAGGAAGGAGGCTTTGCCAGAGGATGCCAAGCTTTTGTACCAAAATTGGGAGTTAGATTCTGCTATTTCTTTGGAAGGAAGGCTTTTACACTCGGATCAATTCAAATGTTTGGACAAGGCTGCAATTGTCACAGATGAAGAGGGCAATGATCCAAATGCTCCACCAAACTTATGGAAATTAGCCACCGTCCATAGAGTTGAGGAGCTAAAATCCATCATTAGAATGCTTCCAATTTGGGCCTCAGGAATTTTGCTCATAACTGCTTCATCAAATCAGCACAGCTTTGTCATTCTACAGGCTCGCACAATGAATAGACACCTCTCTCACTCATTCCAAATCCCCCCAGCTAGCATGTCCATTTTCAATGTCCTAACCATGATGGTAGGCATTGTTCTCTATGAACGCCTTTTTGTTCCCTTTGCTCGTAGATTCAATGGGAACCCTTCTGGAATCACATGCCTGCAGAGAATGGGGGTAGGTTTTGTGGTTAACATTTTAGCCACACTAGTTTCAGCACTGGTGGAAATCAAAAGGAAAGCGGTTGCTGCCAAGTACCACTTATTGGATAGTCCAAATGCCACTATTCCTATTAGAGTGTTCTGGTTGGTACCTCAGTATTGTCTGCATGGGGTGGCTGAAGTTTTCATGGTTGTGGGGCATTTGGAATTTCTCTATGATCAGTCACCTGAGAGCATGAGAAGCACTGCTACAGCTCTGTATTGCATAACTACAGCCGTTGGGAACTATGTTGGCACACTATTGGTCTCACTAGTTCATAAGTATTCTGGCAAGGAAAGGAATTGGTTGCCTGATAGGAACCTCAATAGAGGTAGACTGGAGTgctattattttcttgttagCGGGATTCAACTTGTGaatctcatttattatttaatttATATGGAGATAGAGAAGAGCGTGGGTGGCGAGGTGGCGCTGAAAGAAGAGGCAGACAGTAAGAAGAGGAAACGCCAGCAACGTCGTGGAGGCATCCGAACATTGCCTTTCATCCTTGCAAATGAATTTTGTGATAGATTTGCGGTAGCTGGTTTTAatggcaacttgataagttacCTGACCCAAGTGCTGAACATGCCACTGGTATCTGCCTCCAACATTCTCACAATCTTTGGTGGAACGGCTAGCTTCACCCCTCTTCTTGGTGCTCTCATTGCTGAGTCCTTTGCTGGCCGCTTTTGGACCATTACTGGATTGGTCAGTTTAACAGTATCAGCTATACTGCACCATTTTCGCCCCCCACCATGCCCAACACAAGTGAACTGCCAAGAAGCCACACCATCACAGCTGAGCCTGTTCTATATCTCTCTCCTCCTCACATCTCTTGGATCAGGTGGCATTAGGCCTTGTGTTGTGCCCTTTTTAGGGGACCAGTTTGACATGACCAAAAATGGTGTGGCATCTAGGAAATGGAACCTTTTTAATTGGTACTTTTTCAGCCTGGGATTGGCTTCTCTTAGTGCTTTGACCATTGTGGTTTACATTCAAGACAACACGGGCTGGGGTTGGGGCTTTGGCATACCAACTATTGTCATGCTGGTATCCATCATTGCCTTTGTGTTGGGCTCACCACTCTATAAGACTGTGAAACCAGAAGGGAGCCCTTTGGTTCGCTTGGCCCAAGTGATTGTGGCAGCTATAAGGAAGAGGAAGGAGACTTTACCAGACGATCCCAAGTTTTTGTACCAAAATATGGATCTCGATGCTGCTTTTTCCTTGGAAGGAAGGCTTTTACACACGGATCAATATAAATGGTTAGACAAGGCTGCAATTGTCACAGGGGAGGAGGGCAGAGACCCAAATGCACGACCAAACTTATGGAAATTGGCTACTGTTCAGAGAGTTGAGGAGCTAAAATCCATCATTAGAATCCTTCCAATTTCTTCATCAGGAATTTTGCTCATAGCAGCTTCATCACACCTTCCTAGCTTTGTAATTCAACAAGCTCGCACAATGGACCGCCACCTCTCTCGCTCATTCCAAATTTCCCCAGCTAGCATGTCCATTTTCAGCGTGCTAACCATGATGACAGGAGTCATTCTATACGAACGCCTTTTTGTTCCCTTTGTCCGTAGATTCACAAAGAACCCTTCTGGAATCACGTGCATACAAAGAATGGGAATAGGCTTTGTAATTAACACTATAGCCACGGTAGTTTCAGCACCTGTTGAAGTCAAAAGAAAAGCAGTTGCTGCCAAGTACCACTTATTGGATGATCCAAATGCCACTATTCCTTTAAGTGTGTTCTGGTTGGTACCTCAATATTGTTTGCATGGGTTGGCTGATGTTTTTATGTCTGTGGGCCTTTTTGAATTTCTCTATGATCAGTCACCTGAAAGCATGAGAAGCAGTGCCACTGCTTTGTACTGTGTAGTAATAGCCATTGGAAGCTATGTTGGTACACTTGTTGTATCACTTGTCCATAAGCATAGTGGCAAGGAGAGGAATTGGTTGCCTGATAGGAACCTCAATAGGGGTAGGCTTGACTACTATTACTTGCTTGTTAGCGGGATTCAAGTTTTGaatctcttttattttggaATTTGTGTTTGGTGTTACACTGACAAGCCCTTGGAAGAAAATACTAAAATGGGCAAGCAAAAGGATTTGGAACAGGCCAATACAAAGATCTCATCTaaagaagagaagaaacaGCATCGACGAGGAGGCATCCGGACATTACCTTTCATCCTTGCAAATGAAGTGTGTGACAGATTTGCGAGCGCTGGTTTTcatggcaacttgataagttacTTGACCCAAGAGCTGAACATGCCACTGGTATCTGCCTCTAACACACTGACAAACTTTGGTGGAACATCTAGCCTCACCCCTCTCATTGGGGCTATTGTAGCAGATTCCTTTGCTGGCCGCTTTTGGACCATTACCGTTGCTTCTCTCATTTATGAACTGGGATTGATTAGCATCACTGTATCAGCTATACTGCCACATATGCGCCCCCCACCATGCCCAACACAAGTGAACTGCCAAGAAGCCACATCCTCACAACTGTGGATACTCTACATCTCCCTTCTCCTTACATCTATTGGATCAGGTGGCATTAGACCTTGTGTTGTGCCCTTTTCAGCAGACCAATTTGATATGAGCAAAAGTGGTGTGGCATCAAGGAAGTGGAACCTCTTCAATTGGTACTTTTTTTGCATGGGATTGGCTTCTCTAAGCGCTTTGACTATTGTGGTTTACATTCAAGACAATATGGGTTGGGGTTGGGGCCTTGGAATTCCAAGCATTGCCATGTTGATATCCATCATTGCCTTTGTGTTGGGCTCACCACTCTACAAGACTGTGAAACCAGAAGGGAGCCCTTTGGTTCGTTTAGCCCAAGTAATCGTAGCAGCTATAAAGAAACGGAAGGAGGCTTTACTAGAAGATCCCAAGCTTTTGTACCAAAATTGGGAACTTGATGCTCCTATTTCTTTGGAAGGGAGGCTTTTACACTCTGATCAATATAAATGGTTGGACAAGGCCGCAATTGTCACAGAAGAGGAGGCCAGAGATCCATGTACAACACCAAACTTATGGAAATTAGCCACTGTCCACAGAGTTGAGGAGTTAAAATCTATCATTAGAATGCTTCCAATTTGGGCATCAGGAATTTTGCTCATAACTTCTTCATCACATCTGCACAGCTTTGTAATTCAACAAGCTCGCACAATGGACCGTCACCTCTCTCACTCATTCCAAATTTCCCCGGCTAGCATGTCCATTTTCAGTGTGTTAACCATGATCTCAGGAGTTGTTATATACGAACGCCTTTTTGTTCCCTTTGCTCGTAGGTTCACAGGGAATCCTTCTGGAATCACTTGCTTACAAAGAATGGGAGTAGGCTTTGTAATTAACATCATAGCCACTGTGGTTGCTGCACTGttggaaatgaaaaggaaatCAGTTGCTGCCAAGTACCACTTATTGGATGATCCAAAAGCCACTATTCCTATTAGTGTGTTCTGGTTGGTACCTCAATATTGTTTGCATGGGATGGCTGAAACTTTCATGTCTGTTGGGCATTTGGAGTTTCTCTTTGAGCAGTCACCTGAAAGCATGAGAAGCAGTGCTACGGCTCTGTACTGCATAACCTCAGCCATTGGGAACTACATAGGAACATTATTGGTGTCATTAGTGCATAAATATACTGGCAAGGAGAGGAATTGGCTGCCTGATAGGAACCTCAATAGGGGTAGATTggactattattattttcttgttagTGGGATTCAAGTTATaaatctcatttattatttaatatgtgcTTGGTTTTACACTTACAAGCCCGTGGAAGAAATTATTGAAAGGAACAAGGAAGAAGATTTGGAACAAGCCAATGAACATATCTCATCTGTCAATTTAAGGGATGGTAgggaggaagaaaagaaaggatttacgaaaaataaatga 5223 0.4258 MARWSRKKNRLTMKIHNSRMEIEQSTITVIAPNSKSSCTNELCDRFASAGFNANMISYLTQQLNMPLVSASITLTNFSGTSNFTPLLGAFIADSFAGRFWTIVVASLIYELGLVIITVSAILPHLHPPPCPTQVNCQEASSSQLWILYISLLLISLGTGGIRPCVVPFSADQFDMTKNGVASRKWNLFNWYFFCMGLASLSALTIVVYIQDNMGWGWGLGIPTIAMLLSVIAFVLGSPLYKTVKPHGSPLVRLVQVVVAAVKKRKEALPEDAKLLYQNWELDSAISLEGRLLHSDQFKCLDKAAIVTDEEGNDPNAPPNLWKLATVHRVEELKSIIRMLPIWASGILLITASSNQHSFVILQARTMNRHLSHSFQIPPASMSIFNVLTMMVGIVLYERLFVPFARRFNGNPSGITCLQRMGVGFVVNILATLVSALVEIKRKAVAAKYHLLDSPNATIPIRVFWLVPQYCLHGVAEVFMVVGHLEFLYDQSPESMRSTATALYCITTAVGNYVGTLLVSLVHKYSGKERNWLPDRNLNRGRLECYYFLVSGIQLVNLIYYLIYMEIEKSVGGEVALKEEADSKKRKRQQRRGGIRTLPFILANEFCDRFAVAGFNGNLISYLTQVLNMPLVSASNILTIFGGTASFTPLLGALIAESFAGRFWTITGLVSLTVSAILHHFRPPPCPTQVNCQEATPSQLSLFYISLLLTSLGSGGIRPCVVPFLGDQFDMTKNGVASRKWNLFNWYFFSLGLASLSALTIVVYIQDNTGWGWGFGIPTIVMLVSIIAFVLGSPLYKTVKPEGSPLVRLAQVIVAAIRKRKETLPDDPKFLYQNMDLDAAFSLEGRLLHTDQYKWLDKAAIVTGEEGRDPNARPNLWKLATVQRVEELKSIIRILPISSSGILLIAASSHLPSFVIQQARTMDRHLSRSFQISPASMSIFSVLTMMTGVILYERLFVPFVRRFTKNPSGITCIQRMGIGFVINTIATVVSAPVEVKRKAVAAKYHLLDDPNATIPLSVFWLVPQYCLHGLADVFMSVGLFEFLYDQSPESMRSSATALYCVVIAIGSYVGTLVVSLVHKHSGKERNWLPDRNLNRGRLDYYYLLVSGIQVLNLFYFGICVWCYTDKPLEENTKMGKQKDLEQANTKISSKEEKKQHRRGGIRTLPFILANEVCDRFASAGFHGNLISYLTQELNMPLVSASNTLTNFGGTSSLTPLIGAIVADSFAGRFWTITVASLIYELGLISITVSAILPHMRPPPCPTQVNCQEATSSQLWILYISLLLTSIGSGGIRPCVVPFSADQFDMSKSGVASRKWNLFNWYFFCMGLASLSALTIVVYIQDNMGWGWGLGIPSIAMLISIIAFVLGSPLYKTVKPEGSPLVRLAQVIVAAIKKRKEALLEDPKLLYQNWELDAPISLEGRLLHSDQYKWLDKAAIVTEEEARDPCTTPNLWKLATVHRVEELKSIIRMLPIWASGILLITSSSHLHSFVIQQARTMDRHLSHSFQISPASMSIFSVLTMISGVVIYERLFVPFARRFTGNPSGITCLQRMGVGFVINIIATVVAALLEMKRKSVAAKYHLLDDPKATIPISVFWLVPQYCLHGMAETFMSVGHLEFLFEQSPESMRSSATALYCITSAIGNYIGTLLVSLVHKYTGKERNWLPDRNLNRGRLDYYYFLVSGIQVINLIYYLICAWFYTYKPVEEIIERNKEEDLEQANEHISSVNLRDGREEEKKGFTKNK 1740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1613 1740 Gene3D MFS general substrate transporter like domains 1132 1703 IPR036259 -
Ssu4g1613 1740 PANTHER NITRATE TRANSPORTER 1 582 1134 - -
Ssu4g1613 1740 MobiDBLite consensus disorder prediction 1714 1740 - -
Ssu4g1613 1740 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 1149 1710 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu4g1613 1740 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 582 1134 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu4g1613 1740 Pfam POT family 665 1086 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu4g1613 1740 Pfam POT family 99 531 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu4g1613 1740 Pfam POT family 1228 1660 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu4g1613 1740 Gene3D MFS general substrate transporter like domains 16 570 IPR036259 -
Ssu4g1613 1740 SUPERFAMILY MFS general substrate transporter 1148 1703 IPR036259 -
Ssu4g1613 1740 SUPERFAMILY MFS general substrate transporter 44 564 IPR036259 -
Ssu4g1613 1740 Gene3D MFS general substrate transporter like domains 571 1131 IPR036259 -
Ssu4g1613 1740 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 39 564 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu4g1613 1740 Coils Coil 1132 1152 - -
Ssu4g1613 1740 PANTHER NITRATE TRANSPORTER 1 1149 1710 - -
Ssu4g1613 1740 PANTHER NITRATE TRANSPORTER 1 39 564 - -
Ssu4g1613 1740 SUPERFAMILY MFS general substrate transporter 579 1129 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1613 Ssu-Chr4 27731203 27796403 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1613 40 589 Organic Solute Cotransporters AT1G68570 58.333 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1613 - - vun:114190486 1812.35