Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1609 ATGGAGCTGGACATCCAGTGGTTTATGAATAATGCTGATCAACAGCATTTTGAGTTTCAACATTTCCCTTCTTCCTATCTCCGGCTGGCCGCGCATCGTGTTGCTCAACACTACAATATGCAGACAATGGTTCAAGATAATGGCTTAGATGGATTGGGAAGTAAAATTCTGGTGAGGAAATTACCAGAAAGCAAGTATCCTGTGGTTCGATTATCTGAAATACCTGTGAAGCAGTTGGAATATGATAAATCTGAgcagaaaaaaattgttattagaCCTAGGCCTAATAAAACTAGTTTGAATGAAGCCAACGGAGTTGGGATAAAAGGAAATCCTGTAAGAAGTGTGGAAGAGAGGAAGGAGGAATATGATCGGGCACGAGCACGTATCTTTAGTAGCTCTAGAAGCTCTGACTCAGGTGATACCTCATCCATAGTTCCAATGGATGGGAGAAATTCTTCTACTAGCAAGGATGAGATTGAAACTAGCAAGAACCCCATGGCTGATTCAGAAAGATGTATCAGTGTCAGGGATAGTTGTTCGACTCGAGTTGCCATATTTAGAGATAGGGAAAAGGATCGTAGTGATCCAGATTATGACCGTAGTTATGGAAGGTATACTAGGAGTATTCCAGCATCTGCTGTTAACTTGGTGCCATTTAATTTGCAAAAAGCTCAACCTTCATTTGCTCAATATGATGCTACATTTAATCAGTTGGGTCAGATGTCACAAACTCCAGCTCCACTTGGTTATGGACCTCCTTCAACCCCGATAATGAGTCCTTTTTGCACCACAGGATTGAATCAGACATCTAGGGATGGTACTTACCTACAGTGGCCTAGTGCTGCTATGATGTATGCACATTCATATGACCAATTTAGACATGCTGTTTTCCAGGCTCCATTTGGTCAACAGCCGTTGAGCTTTGACTATTCACAGAACTATTAG 948 0.4103 MELDIQWFMNNADQQHFEFQHFPSSYLRLAAHRVAQHYNMQTMVQDNGLDGLGSKILVRKLPESKYPVVRLSEIPVKQLEYDKSEQKKIVIRPRPNKTSLNEANGVGIKGNPVRSVEERKEEYDRARARIFSSSRSSDSGDTSSIVPMDGRNSSTSKDEIETSKNPMADSERCISVRDSCSTRVAIFRDREKDRSDPDYDRSYGRYTRSIPASAVNLVPFNLQKAQPSFAQYDATFNQLGQMSQTPAPLGYGPPSTPIMSPFCTTGLNQTSRDGTYLQWPSAAMMYAHSYDQFRHAVFQAPFGQQPLSFDYSQNY 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1609 315 MobiDBLite consensus disorder prediction 113 131 - -
Ssu4g1609 315 Pfam R3H domain 1 48 IPR001374 GO:0003676
Ssu4g1609 315 ProSiteProfiles SUZ domain profile. 65 135 IPR024771 -
Ssu4g1609 315 Gene3D - 1 95 IPR036867 GO:0003676
Ssu4g1609 315 MobiDBLite consensus disorder prediction 132 153 - -
Ssu4g1609 315 PANTHER CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN 1 314 - -
Ssu4g1609 315 PANTHER OS05G0411600 PROTEIN 1 314 - -
Ssu4g1609 315 Pfam SUZ domain 85 134 IPR024771 -
Ssu4g1609 315 CDD R3H_encore_like 1 60 - -
Ssu4g1609 315 MobiDBLite consensus disorder prediction 93 173 - -
Ssu4g1609 315 SUPERFAMILY R3H domain 1 82 IPR036867 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1609 Ssu-Chr4 27668046 27669927 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1609 - - gmx:100814835 556.599