Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1604 ATGAGTCAGacCACACCCATTTTCACCATGACAAAGATAAGTCCTGAAGTTGAAATCAGGATGCCAATGGAGGCATTTCCGCCAGTTTCAGCTGATGTGAGCTTTATTTCTAATAGTTTTCCAAAGTACAAATTGGGAGCTGATAATCAAATTCTGGAAGAGCCAGTTGAGGATAACCAGGGTCCTTCTTTGAAGGATGTTATTGAACAAGAAGCTTCTAATTTGTCAGACCAACACAAGCGTATCTCAGTTCGTGACCTTGCCAGTAAATTCGACAAGAACTTGGCTGCAGCTGCTAAGTTGTCTAATGAGGCAAAGCTAAGAGAGGTGGCATCTCTGGAGGGACATGTTCTTTTGAAAAAGCTAAGAGATGCATTAGAATCCTTAAGAGGCCGTTTTGCGGGAAGAAACAAAGAGGATGTGGAGAAAGCTATCTCCATGGTGGAAGCTTTAGCAGTTAAGTTGACTCAAAATGAAGGAGAATTGATTCAAGAGAAGTTTGAAGTGAAGAAGCTTGTAAACTTTCTCAAACAGGCTTCTGAAGATgctaaaaagttagttaatcAAGAGAAGTCTTTTGCTTGTGCCGAAATTGAAAGTGCCAGGGCAGTGGTGCTGAGAATTGGGGAGGCACTTGAGGAACAAGAAAAAGCTTCCCAAGCTTCTAAACCACAGGATGTGGATGGACTAATAGAAGAGGTTCAAGAGGCTAGAAGAATCAAATTGATGCATCAGCCAAGCAAGGTGCTGGCCATGGAATATGAACTACGTGCTCTTAGGGATCAAATTCGAGAGAAatgtatattttcaattaagcTTCAGAAAGAGCTTACCATGAGCAAGAGGGATGAGGAAAATAAATCTCGTTTATATATGTTAGATGGTTCTGAAACTTTGGGTTCATTTCTGCGAGTTCAGCCTTGCTCAGATGAAGTGCCACAGGTTTTGAAATGTTCAGTTCAGTGGTATCGCTTGTCATCTGAAGGCAGCTGGAGGGAAGTTATTTCAGGTGCGAACAAATCAATATATGCTCCTGATCCCTCTGATGTTGGGAGAATCTTACAAGTAGATATTGTCTCCAATGGGAAAAAACTCACACTAACAACTAATCCCATTCAAACTGTTTCAGGACTTGGAAGCCATGTGGAGACACTGCTACGAAAATCTAATACTGATTTTAATGTAGTTATTTCTCAGATGAATGGAAAAGATCACTCATCACATTCTACTCATTCATTTAATGTGGGGAGAATGAGGATAAAGCTATGTAGAGGTTGGATTACAAAAGCTAGAGAGATTTACTCCCCATCAATGCAGcTATGTGGAGTTAGAGGTGATGTCGGTAATGCAGCGAAGGCATTGTTTTGGCAAGCTAGAAAGGGCCTCTCATTTGTGTTAACCTTTGAgtcagagagagaaagaaatgtagCCATTATGGTTGCCAGGAAATATGCTCTTGATTGCAATGTCGTGCTTGCTGGGCCAGATGATCTAGTGTAG 1500 0.398 MSQTTPIFTMTKISPEVEIRMPMEAFPPVSADVSFISNSFPKYKLGADNQILEEPVEDNQGPSLKDVIEQEASNLSDQHKRISVRDLASKFDKNLAAAAKLSNEAKLREVASLEGHVLLKKLRDALESLRGRFAGRNKEDVEKAISMVEALAVKLTQNEGELIQEKFEVKKLVNFLKQASEDAKKLVNQEKSFACAEIESARAVVLRIGEALEEQEKASQASKPQDVDGLIEEVQEARRIKLMHQPSKVLAMEYELRALRDQIREKCIFSIKLQKELTMSKRDEENKSRLYMLDGSETLGSFLRVQPCSDEVPQVLKCSVQWYRLSSEGSWREVISGANKSIYAPDPSDVGRILQVDIVSNGKKLTLTTNPIQTVSGLGSHVETLLRKSNTDFNVVISQMNGKDHSSHSTHSFNVGRMRIKLCRGWITKAREIYSPSMQLCGVRGDVGNAAKALFWQARKGLSFVLTFESERERNVAIMVARKYALDCNVVLAGPDDLV 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1604 499 Gene3D - 110 161 - -
Ssu4g1604 499 Gene3D - 278 374 - -
Ssu4g1604 499 PANTHER STOMATAL CLOSURE-RELATED ACTIN-BINDING PROTEIN 1 10 497 IPR039640 GO:0003779|GO:0007015|GO:0010119
Ssu4g1604 499 PANTHER STOMATAL CLOSURE-RELATED ACTIN-BINDING PROTEIN 3 10 497 - -
Ssu4g1604 499 Pfam Ig domain of plant-specific actin-binding protein 291 387 - -
Ssu4g1604 499 Gene3D - 375 499 - -
Ssu4g1604 499 Pfam PH domain of plant-specific actin-binding protein 390 497 IPR041144 -
Ssu4g1604 499 Pfam Coiled-coil regions of plant-specific actin-binding protein 110 277 IPR032009 -
Ssu4g1604 499 Pfam Actin-binding domain of plant-specific actin-binding protein 64 106 IPR032012 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1604 Ssu-Chr4 27596853 27606664 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1604 - - gmx:100798320 910.598