Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1592 ATGGCTATGCACAAGATTGTGCAAAGGGGTCGATTCTTGAATTGTCCTCCGCAACTTATTACTGCTTTCTCAGGTTCTGCTGCTTCTCACACATTTTCCTCTCGTGGGGCTGAATCTCTTCATATTCGGGAAATTACAAACACAAGAGAAGTTAGGAATGAATTTGACAAATACCATATAAAAGGTTTATCTCGATGCCTGAACTGGACCTCAAGGCCAAATGACAGTGGTTATGCTTCCTGCTATGTGGTAAATCGTCATTTTGCATCTGATCACAATGATATATGCACAAAGGAGTTCTCAAGTAAGCTTCTTAAAAGTATTCCAGACTATGTAAAGATAGTGGAGGTTGGTCCAAGGGATGGATTGCAAAATGAGAAGGCTATTATTCCTACTGATGTAAAAGTTGAGTTAATAAAACTACTAGTTTCTTCTGGGTTGTCTGTTGTTGAGGCGACAAGTTTTGTCTCACCAAAATGGGTACCCCAGTTGCAAGATGCAAAGGATGTATTGGCAGCAATTCAAAATGTTGAAGGTACTAGGTTTCCTGTCTTGACTCCAAACCTTAAAGGTTTTGAGGCAGCTGTTGCTGCTGGAGCCAAAGAAGTGGCTGTTTTTCCTGCAGCTTCTGAATCATTCTCAAAAGCAAATCTCAATTGTGGCATTGAGGATAATCTTGCTCGATGCCGAGATCTTGCTTCAGCTGCTGGAAGCCTCTCGATCCCAGTTCGCGGATATATATCATGTGTTGTAGGATGTCCTCTGGAAGGAAATATTGCTCCAGCGAAAGTAGCATATGTGGCAAAATCACTTTATGAGATGGGTTGCTCAGAGATTTCACTGGGGGATACAATTGGTGTTGGCACACCTGGTACTGTCATTCCGATGCTTGAAGCTGTTCTTCATGTTGTTCCAACTGACATGCTTGCTGTCCACTTTCACGATACTTACGGTCAGGcactttcaaatattttaatttcaattcagACGGGGATCAGCACAGTGGATTCATCCGTATCTGGTCTTGGAGGTTGTCCATATGCCAAGGGTGCAACTGGGAATGTTGCCACTGAGGATGTCGTTTACATGCTTAATGGACTTGGAGTGAAAACAAATGTGGACCTTGGAAAGCTTATGCTGGCTGGGGATTTCATCTGCAAGCATTTAGGACGTGTATCAGGTTCAAAAGCAGCAACTGCTTTGAGCAAAGTTACAACTCATGCCTCCAAACTATGA 1236 0.4215 MAMHKIVQRGRFLNCPPQLITAFSGSAASHTFSSRGAESLHIREITNTREVRNEFDKYHIKGLSRCLNWTSRPNDSGYASCYVVNRHFASDHNDICTKEFSSKLLKSIPDYVKIVEVGPRDGLQNEKAIIPTDVKVELIKLLVSSGLSVVEATSFVSPKWVPQLQDAKDVLAAIQNVEGTRFPVLTPNLKGFEAAVAAGAKEVAVFPAASESFSKANLNCGIEDNLARCRDLASAAGSLSIPVRGYISCVVGCPLEGNIAPAKVAYVAKSLYEMGCSEISLGDTIGVGTPGTVIPMLEAVLHVVPTDMLAVHFHDTYGQALSNILISIQTGISTVDSSVSGLGGCPYAKGATGNVATEDVVYMLNGLGVKTNVDLGKLMLAGDFICKHLGRVSGSKAATALSKVTTHASKL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1592 411 PANTHER HYDROXYMETHYLGLUTARYL-COA LYASE 33 411 - -
Ssu4g1592 411 SUPERFAMILY Aldolase 107 407 - -
Ssu4g1592 411 Pfam HMGL-like 112 384 IPR000891 GO:0003824
Ssu4g1592 411 ProSiteProfiles Pyruvate carboxyltransferase domain. 112 379 IPR000891 GO:0003824
Ssu4g1592 411 CDD DRE_TIM_HMGL 114 387 - -
Ssu4g1592 411 Gene3D Aldolase class I 105 404 IPR013785 -
Ssu4g1592 411 PANTHER HYDROXYMETHYLGLUTARYL-COA LYASE 33 411 IPR043594 GO:0016833
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1592 Ssu-Chr4 27283059 27289329 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1592 K01640 - gmx:100801507 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1592 4 27283059 27289329 Ssu4g1592 4 27283059 27289329 ECH