Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1590 ATGATAACTGCGTTGGACTTGTACCACGTGCTGACGGCCGTGGTGCCTCTGTACGTGGCGATGATCCTGGCGTACGGCTCCGTGAAGTGGTGGAAGATCTTCACGCCGGACCAATGCTCGGGCATCAACCGGTTCGTGGCGCTCTTCGCGGTGCCGCTTCTCTCCTTCCACTTCATCTCCACCAACAACCCGTACGCGATGAACTACAGGTTCATAGCCGCGGACTCGCTCCAGAAGGCCATGGTCCTCGCGGTGCTGTTCGTGTGGTCCAGGACGAGCGCGAGAGGGTCCCTGGAATGGTCCATAACGCTCTTCTCCCTCTCGACCCTCCCCAACACGCTCGTCATGGGGATCCCGCTGCTGAAGGGCATGTACGGGGACGCGTCGGGGACCCTCATGGTTCAGATAGTGGTCCTCCAGTGCATCATTTGGTACACCTTGATGCTGTTCTTGTTCGAGTACAGGGGCGCGAGGCTCCTCATCGTCGAGCAGTTCCCCGACACCGCGGGCTCTATTATATCGTTCAAGGTTGACTCCGACATTATATCTTTGGATGGGAAGGAGGCTCTGCAGACCGAGGCTGAGGTCGGCGAAGACGGGAAGCTTCACGTGACGGTCAGGAAGTCGGCGAGTTCGCGTTCCGAGGTATTCTCGCGGCGCTCGCATGGCCCCAACTCGGTTTCGCTGACGCCGCGGCCGTCCAACCTGACCAATGCGGAGATTTACTCGCTGCAGTCGTCGAGGAACCCCACTCCCAGAGGGTCGAGTTTTAACCACACGGATTTTTACTCCATGGTGAATGGGAGGAACGTGAGCGTGAGCGTGAGTCCGAGGGGGAGTAATTTTGGGTTTGACGAGGAGAGTGGAGGGAGAGTTAACGGGGGCGGGGGAGGGTACCCTGCTCCTCCCAATGCCGGGATTTTCTCTCCGGCGGCGAAGAAGAAAGGCAACGGCGAGCCTGGCGGCAAGGATCTTCACATGTTTGTGTGGAGTTCGAGTGCCTCTCCGGTGTCCGAAGGTGGAATCCATGTATTCAGAGGTGGGGATTATGGGAATGACCAGCTTGCTGTTGCTGGGGTGCCTCACCAGAAAGATTATGATGAGTTTGGTCACGATGAGTTTAGCTTCGGGAACAGAACCGTTGCCAATGGGGTGGACAAGGAAGGGCCCGTACTTTCCAAGCTTGGTTCGAGTTCCACGGCTGAGCTTCACCCCAAAGCTCAAGGTGAATCCAAAGCTACGTCCATGCCACCCGCTAGTGTTATGACAAGACTCATTTTGATTATGGTTTGGAGAAAGCTGATTAGGAACCCCAACACATATTCCAGCCTCTTCGGTCTCACTTGGTCTTTGATCTCGTTCAAGTGGAATGTTGTTATGCCTGCGATTGTTGCtaaatcaatatcaattttaTCTGATGCTGGCCTTGGGATGGCGATGTTTAGCcttgGGTTATTCATGGCTTTGCAGCCAAAGCTTATTGCATGTGGAAACTCGGTTGCTTCTTTCACTATGGCGGTTCGTTTCCTTACTGGGCCTGCAGTCATGGCCGTTGCTTCAATCGTTGTTGGCCTCAGGGGGGTTCTGTTGCACATTGCTATTGTACAGGCTGCTCTGCCTCAAGGGATCGTCCCTTTTGTGTTTGCTAAGGAATATAACGTTCATCCGGACATACTGAGCACTGGGGTTATATTTGGGATGCTAATTGCTCTTCCTATTACGCTAGTTTACTACATTTTGCTTGGGCTTTGA 1752 0.5388 MITALDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNNPYAMNYRFIAADSLQKAMVLAVLFVWSRTSARGSLEWSITLFSLSTLPNTLVMGIPLLKGMYGDASGTLMVQIVVLQCIIWYTLMLFLFEYRGARLLIVEQFPDTAGSIISFKVDSDIISLDGKEALQTEAEVGEDGKLHVTVRKSASSRSEVFSRRSHGPNSVSLTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMVNGRNVSVSVSPRGSNFGFDEESGGRVNGGGGGYPAPPNAGIFSPAAKKKGNGEPGGKDLHMFVWSSSASPVSEGGIHVFRGGDYGNDQLAVAGVPHQKDYDEFGHDEFSFGNRTVANGVDKEGPVLSKLGSSSTAELHPKAQGESKATSMPPASVMTRLILIMVWRKLIRNPNTYSSLFGLTWSLISFKWNVVMPAIVAKSISILSDAGLGMAMFSLGLFMALQPKLIACGNSVASFTMAVRFLTGPAVMAVASIVVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1590 583 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 583 - -
Ssu4g1590 583 TIGRFAM 2a69: auxin efflux carrier 1 583 IPR014024 -
Ssu4g1590 583 Pfam Membrane transport protein 9 578 IPR004776 GO:0016021|GO:0055085
Ssu4g1590 583 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1 583 - -
Ssu4g1590 583 MobiDBLite consensus disorder prediction 296 320 - -
Ssu4g1590 583 MobiDBLite consensus disorder prediction 213 232 - -
Ssu4g1590 583 MobiDBLite consensus disorder prediction 396 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1590 Ssu-Chr4 27257187 27259960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1590 1 574 Organic Solute Cotransporters AT1G73590 65.367 0.0 755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1590 K13947 - gmx:100820506 1047.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1590 4 27257187 27259960 Ssu4g1590 4 27257187 27259960 ECH