Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1588 ATGAACAATGTTGCTGAAAGACCACTTAATGGGGACGTAGAAGATGACGATGAAGATGATGGTGGAGGCCTTGAAGCCTGGGAGAGAGCTTATGCAGAAGATAGATCGTGGGAGGCTTTGCAAGAGGATGAATCTGGACTTCTTCGCCCCATAGATAATACAGCCATTTACCATGCTCAGTATCGCAGGCGCCTCCGTACCCTTGCTTCCTCAGCGGCTACTGCACGAATTCAGAAGGGGCTTATACGATACCTATACATTGTTGTTGACCTGTCCAAGGCAGCTTCAGAGACAGACTTTCGACCAAGTAGGATGGCTGTGATTGGGAAACAGGTTGAGGCATTTATCAGGGAATTCTTTGATCAGAATCCACTTAGTCATGTTGGTCTGGTGACTATAAAAGATGGGATTGCTCATTGCATAACAGAACTCGGTGGCAGTCCTGAGTCTCACATTAAAGCTTTGATGGGTAAACTGGAATGCTCAGGTGATGCCTCCTTACAAAATGCACTAGAGCTTGTTCTTGGATATCTAAATGTAATCCCATCATATGGTCATCGAGAAGTTCTGATCTTATATTCGGCTCTCAGTACATGTGATCCTGGTGATCTCATGGAAACCATCCTGAAAtgcaaaaaaagtaaaataaggtGCTCAGTCATTGGTCTTGCTGCTGAAATGTTTGTATGCAAACATCTCTGTCAGGAAACTGGAGGGACTTATTCTGTTGCGCTAGATGAGTCCCACTTTAAAGAGTTGATCCTAGAGCATGCACCACCACCTCCAGCAATAGCAGAGTATGCAACtgctaatttaattaagatgGGTTTCCCACAACGATCAGCGGAGGGTTCTGTCGCAATATGCACATGTCATGAAGAGGCTAAGACTGGAGGGGGATACACTTGTCCAAGATGCAAAGTTCGTGTCTGTGAGCTTCCCACTGAATGTCGTATCTGTGGATTGACCCTTATTTCTTCACCCCATTTGGCAAGGTCGTATCATCATCTATTTCCTATAGTGATGTTTGATGAGGTCTCTCCGTCATCTCAAAATGATTCAAACCGCAATTTCCCCAATACTTGTTTTGGTTGTCAACAAAGTCTTCTTAGTCAGGGAAACAAGCCTGGACTTTCTGTCGTTTGCCCAAAATGCAAACAACAATTTTGCCTTGATTGTGACATCTACATTCATGAGAGCTTACATAACTGCCCAGGCTGTGAGAGTTCCAGGCATTCCAAGGCTTTGCAATGA 1254 0.4354 MNNVAERPLNGDVEDDDEDDGGGLEAWERAYAEDRSWEALQEDESGLLRPIDNTAIYHAQYRRRLRTLASSAATARIQKGLIRYLYIVVDLSKAASETDFRPSRMAVIGKQVEAFIREFFDQNPLSHVGLVTIKDGIAHCITELGGSPESHIKALMGKLECSGDASLQNALELVLGYLNVIPSYGHREVLILYSALSTCDPGDLMETILKCKKSKIRCSVIGLAAEMFVCKHLCQETGGTYSVALDESHFKELILEHAPPPPAIAEYATANLIKMGFPQRSAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRICGLTLISSPHLARSYHHLFPIVMFDEVSPSSQNDSNRNFPNTCFGCQQSLLSQGNKPGLSVVCPKCKQQFCLDCDIYIHESLHNCPGCESSRHSKALQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1588 417 PIRSF TFIIH_SSL1 2 410 IPR012170 GO:0000439|GO:0006289|GO:0006351
Ssu4g1588 417 TIGRFAM ssl1: transcription factor ssl1 300 409 IPR012170 GO:0000439|GO:0006289|GO:0006351
Ssu4g1588 417 SMART VWA_4 82 258 IPR002035 -
Ssu4g1588 417 Gene3D von Willebrand factor, type A domain 78 263 IPR036465 -
Ssu4g1588 417 CDD vWA_transcription_factor_IIH_type 80 262 IPR007198 -
Ssu4g1588 417 PANTHER GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 17 407 - -
Ssu4g1588 417 MobiDBLite consensus disorder prediction 1 23 - -
Ssu4g1588 417 ProSitePatterns Zinc finger C2H2 type domain signature. 382 402 IPR013087 -
Ssu4g1588 417 SUPERFAMILY vWA-like 79 247 IPR036465 -
Ssu4g1588 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 416 IPR013083 -
Ssu4g1588 417 SUPERFAMILY Cysteine-rich domain 335 408 IPR046349 -
Ssu4g1588 417 SMART C1_4_2 361 409 IPR004595 GO:0006281|GO:0008270
Ssu4g1588 417 Pfam Ssl1-like 88 278 IPR007198 -
Ssu4g1588 417 Pfam TFIIH C1-like domain 361 409 IPR004595 GO:0006281|GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1588 K03142 - gmx:100803090 808.135