Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1585 ATGAACGGAGGCCCATCTGGTTTCACAAATGCTCCTGTCACAAGGGCTTTCATCATTGCTTCGGCGCTTTTCACAATCTTCTTCGGGATCCAGGGCCGTTACAACACTCTGGGGTTGTCTTATCAGGATATTTTTGGAAAGTTTCGCCTTTGGAAGTTGATCATGTCCGTATTTTCCTTCTCATCAACACCAGAGTTGATGTTTGGACTGTATCTGCTATATTATTTCAGGGTCTTTGAGAGACAGATAGGTTCCAATAAATACTCGGTCTTTATCGTGTTCTCCATATTAACTTCGCTACTGTTTGAGGTCCTTGCTGTAGCACTTTTAAAAGATCCTACAGCATACCTAGTCACTCCTGGACCTTATGGCCTTATATTTGCTTCATTTGTACCCTTTTTCTTTGACATTCCGGTTTCAACACGATTTCGTGTCTTTAGTTTCCTCTTCTCAGACAAGTCATTCATATATCTAGGTGGTCTTCAGCTTCTTTTGTCATCATGGAAAAGGTCTATCTTACCAGGGGTGTGTGGCATCCTTGCTGGTTCGTTGTACCGTTTGAATGTCTTTTACATCCGCAAAGCAAAGTTCCCAGAGTTGATCTCATCATTTTTTTCACGAATTTCGTTGCCATCTATGGGGAGTCCACGGGCTGCATCATCAACAAGGAATGTTGTCGGGAATGTACCTTCCTATCCAGCTCGCCAAATGGAGAGAAACTACCCTGCTCCAATGCAATCTGCAGCAGAACCATCGGAGGACTCAATCAGTACCCTCGTCTCTATGGGCTTTGACAGGAATTCTGCCAGACAAGCCCTGGTGCAGGCCAGAAATGATGTCAATGTGGCCACCAACATCCTACTGGAGGCACAGTCTCACTAA 882 0.4456 MNGGPSGFTNAPVTRAFIIASALFTIFFGIQGRYNTLGLSYQDIFGKFRLWKLIMSVFSFSSTPELMFGLYLLYYFRVFERQIGSNKYSVFIVFSILTSLLFEVLAVALLKDPTAYLVTPGPYGLIFASFVPFFFDIPVSTRFRVFSFLFSDKSFIYLGGLQLLLSSWKRSILPGVCGILAGSLYRLNVFYIRKAKFPELISSFFSRISLPSMGSPRAASSTRNVVGNVPSYPARQMERNYPAPMQSAAEPSEDSISTLVSMGFDRNSARQALVQARNDVNVATNILLEAQSH 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1585 293 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 250 290 IPR015940 -
Ssu4g1585 293 Pfam Rhomboid family 48 189 IPR022764 GO:0004252|GO:0016021
Ssu4g1585 293 Pfam UBA/TS-N domain 252 287 IPR015940 -
Ssu4g1585 293 Gene3D - 9 188 IPR035952 -
Ssu4g1585 293 SUPERFAMILY Rhomboid-like 9 194 IPR035952 -
Ssu4g1585 293 SUPERFAMILY UBA-like 245 290 IPR009060 GO:0005515
Ssu4g1585 293 SMART uba_6 252 289 IPR015940 -
Ssu4g1585 293 Gene3D - 218 292 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1585 K25216 - gmx:100805217 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1585 4 27165171 27176111 Ssu4g1585 4 27165171 27176111 ECH