Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1584 ATGCTTTACTTCCTTATATCTTTTGTCTCATTTCTCATCCTTTCCAAGTCCTTTACCAGTAAGCCTTTCTCATCAGGGGGGAGTGGGACCAAACTAGGGTCaattgggttttgggggagCCTTTCAAGTTGGCTAGTTTCTACGCTCAGGAAAGGAAGCACAAGCACCCCTTGTagtttttttcagttttctctTGGCATgtcattaaaaaagaagaatttactGTCTAAGGTGGAGAATGAGGAAGAGGAGGGAAAGGTCTCTCTCTTGGATTTGCCTGATTTGCCATTGGAGTGTATCCTCGAGCACCTTTCACCTGCTGAATTATGTAGTGTGGCAACAGTGTGCACATCTCTGAGGGATAGATGTAGAAGTGATCATTTATGGAAGAAACACATGGAGAGGAAATGGGGTAAGGTTTTTGGTGATGCTGCTTATAGACAATGGAAATGCCATGTAGCTTCCAAGACCAGAGAGAAGATCTCCAACCAGCACAATCAGAAAGGAATACTTGCTTTCCTTAATGGTGGTTTTAGCCCCTTCCCATGGATTAAATCAAAATCAGAAAAGGCCACACAGTCAAGTAGCTCATTACCAGAAGATTCAATCCTGTCTCTATATCTCTCTCTAGAGAGTGGCAAATTTTGGTTCCCAGCTCAAGTCTACAACCGCGAGAATGGTCATGCTGGGTTCATGCTATCATGTTATGATGCCCAACTTTGCTATGACTCTCGATCTGACACTTTTCTGGCAAGGTACTCTCCTCATGGGAGATGGACAACTGAGGAAAACATACAATGGGACCGGCTGAGAGTGCCACCACTTGCCTCTTCTCCACATGCTCTTCACATCTCTGACTGTTTGGATGACTTGAGACCTGGAGATCATATTGAGATCCAATGGAGAAGAAACAAAGAGTTTCCTTATGGTTGGTGGTATGGTGTCATTGGTCATTTGGAACAATGTCAAGGACATGGGAACCAGTGCCATTGTCACAATAATGATATGGTGATTTTGGAGTTCACACAGTACACTGCCGGATCCAGATGGAGACAAGCCGCGATAAACAGGAAGCATCATATAGAAAAAGGCAATGAAGTAAATGGTTTTTATGGAGGAATCAGGAAGCTGCAAAGCAAGGAAGAAATTACAAGGTGGAAGAACATCTGGCCAACCAAAATTGTGGAATAG 1191 0.4181 MLYFLISFVSFLILSKSFTSKPFSSGGSGTKLGSIGFWGSLSSWLVSTLRKGSTSTPCSFFQFSLGMSLKKKNLLSKVENEEEEGKVSLLDLPDLPLECILEHLSPAELCSVATVCTSLRDRCRSDHLWKKHMERKWGKVFGDAAYRQWKCHVASKTREKISNQHNQKGILAFLNGGFSPFPWIKSKSEKATQSSSSLPEDSILSLYLSLESGKFWFPAQVYNRENGHAGFMLSCYDAQLCYDSRSDTFLARYSPHGRWTTEENIQWDRLRVPPLASSPHALHISDCLDDLRPGDHIEIQWRRNKEFPYGWWYGVIGHLEQCQGHGNQCHCHNNDMVILEFTQYTAGSRWRQAAINRKHHIEKGNEVNGFYGGIRKLQSKEEITRWKNIWPTKIVE 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1584 396 Gene3D - 72 166 - -
Ssu4g1584 396 PANTHER ESTS AU081301(E20138) 1 396 - -
Ssu4g1584 396 SMART fbox_2 92 132 IPR001810 GO:0005515
Ssu4g1584 396 PANTHER F-BOX-LIKE PROTEIN 1 396 - -
Ssu4g1584 396 ProSiteProfiles F-box domain profile. 86 132 IPR001810 GO:0005515
Ssu4g1584 396 SUPERFAMILY F-box domain 87 158 IPR036047 GO:0005515
Ssu4g1584 396 Pfam F-box domain 89 131 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1584 Ssu-Chr4 27144263 27146259 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1584 - - gmx:100778469 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1584 4 27144263 27146259 Ssu4g1584 4 27144263 27146259 ECH