Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1581 ATGGACAATATTGAACCCGGTGGCAATATTTCTCTCTTGAATTTGCCAGAACCCGTATTGGATTGCATTCTAAGGTGCCTTTCACCAATGGATCTCGTTCGGATGTCTGAAGTGTGTATTTGTTTAAGGGATAGATGTCGAAGTGATTATTTGTGGGAAGAccacataaagaaaaaatgggGTAGACTCATTGGTGATGTTGCTTACAAGGAGTGGCAATGTCATATAACAACGACAAAGGAGAAAGGAAACCAATTGAGTCAACAGAACATCAGAATGGATCACTGGGATCTTTCAGTGgGATTACTGGTTCGTGACGCCTTAGTTAGATATGATTCCAAAACTGATAACTTTCAAGCAAGGTAA 366 0.3798 MDNIEPGGNISLLNLPEPVLDCILRCLSPMDLVRMSEVCICLRDRCRSDYLWEDHIKKKWGRLIGDVAYKEWQCHITTTKEKGNQLSQQNIRMDHWDLSVGLLVRDALVRYDSKTDNFQAR 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1581 121 SUPERFAMILY F-box domain 7 67 IPR036047 GO:0005515
Ssu4g1581 121 ProSiteProfiles F-box domain profile. 9 55 IPR001810 GO:0005515
Ssu4g1581 121 PANTHER CYCLIN-LIKE F-BOX 100 121 - -
Ssu4g1581 121 Pfam F-box domain 12 53 IPR001810 GO:0005515
Ssu4g1581 121 PANTHER CYCLIN-LIKE F-BOX 7 91 - -
Ssu4g1581 121 PANTHER ESTS AU081301(E20138) 100 121 - -
Ssu4g1581 121 PANTHER ESTS AU081301(E20138) 7 91 - -
Ssu4g1581 121 Gene3D - 7 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1581 Ssu-Chr4 27084592 27085190 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1581 - - gmx:100797585 153.68