Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1580 ATGGATCAAGGAGAACTTGGACGAGTTTTTCAAATGTTTGATCGAAATGGGGATGGTCGTATCACACGGAAAGAGCTTAGTGACTCTTTAAAAAATCTTGGAATTAGCATCTCAGACCAAGATTTGATCCAAATGATTGAGAAAATTGACATAAATGGAGATGGGTATGTTGACATTGACGAGTTTGGTGAGTTGTACCAAACAATAATGGATGAGAAAGATGAGGAGGAGGATATGAAAGAGGCATTCAATGTATTTGATCAAAATGGAGATGGGTTCATCACGGGAGAGGAATTAAGCACAGTGTTGTCTTCTTTAGGCCTAAAGCATGGCAAAACCATAGAAGATTGTAAAAGCATGATCAAGAAAGTGGACGTGGATGGTGACGGAATGGTTAACTTCAAAGAATTTAAGCAAATGATGAAGGCTGGGGGGTTTGCTGCAGCTTCATTAAGTTGA 459 0.3922 MDQGELGRVFQMFDRNGDGRITRKELSDSLKNLGISISDQDLIQMIEKIDINGDGYVDIDEFGELYQTIMDEKDEEEDMKEAFNVFDQNGDGFITGEELSTVLSSLGLKHGKTIEDCKSMIKKVDVDGDGMVNFKEFKQMMKAGGFAAASLS 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1580 152 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Ssu4g1580 152 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Ssu4g1580 152 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 151 - -
Ssu4g1580 152 SMART efh_1 41 69 IPR002048 GO:0005509
Ssu4g1580 152 SMART efh_1 5 33 IPR002048 GO:0005509
Ssu4g1580 152 SMART efh_1 78 106 IPR002048 GO:0005509
Ssu4g1580 152 SMART efh_1 116 144 IPR002048 GO:0005509
Ssu4g1580 152 Pfam EF-hand domain pair 6 67 IPR002048 GO:0005509
Ssu4g1580 152 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Ssu4g1580 152 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Ssu4g1580 152 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Ssu4g1580 152 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Ssu4g1580 152 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 151 - -
Ssu4g1580 152 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Ssu4g1580 152 Gene3D - 2 68 - -
Ssu4g1580 152 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Ssu4g1580 152 SUPERFAMILY EF-hand 5 141 IPR011992 -
Ssu4g1580 152 CDD EFh 82 142 IPR002048 GO:0005509
Ssu4g1580 152 PRINTS Parvalbumin signature 124 137 - -
Ssu4g1580 152 PRINTS Parvalbumin signature 87 103 - -
Ssu4g1580 152 PRINTS Parvalbumin signature 65 83 - -
Ssu4g1580 152 CDD EFh 5 62 IPR002048 GO:0005509
Ssu4g1580 152 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Ssu4g1580 152 Gene3D - 69 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1580 Ssu-Chr4 27078621 27079079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1580 1 148 EF-hand Containing Proteins AT3G07490 80.405 1.51e-76 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1580 K13448 - gmx:100806637 273.478