Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1575 ATGGCACATGTTCTTCTACTTCGCCCTCCTCTGCTTCGCCTCATGACCTCTCGCTTCTTCACCTCCTCTTCCTTCCACACGCGCTTTTCTTCTTTCCCTCCTTCCACGCTCTCTAAAACCAGGACGACTTTTCCTCTGAGAAAATTTTGGGTTCCCTGTTCGGTTCCAAATGCGGTCACTCCAAGGGCGTTTATGTCTTCTGTCTCCACAACTGAAGCTTTTCAGAAAAATCAAAGCTCCACAGCTTATAGTTCTGATCAAATTCAgGTGCTTGAAGGCTTGGACCCTGTGAGGAAAAGGCCCGGGATGTATATTGGAAGCACTGGCCCGCGAGGGTTGCACCATTTGGTGTATGAAATTTTGGATAATGCTGTTGACGAAGCTCAAGCCGGGTTTGCTTCCAAGATAGATGTTGTTTTGCTTGCGGATGATTCTGTGAGCATCACAGGACAATGGTCGCGGGTTACAAATAAATCTGCCTTGGAGACAGTGTTGACGGTCTTGCATGCTGGTGGAAAATTTGGTGGTGCCCACAGTGGCTACTCTGTTTCAGGAGGTTTACACGGTGTTGGTTTGTCTGTAGTTAATGCCTTGTCTGAGTTGCTAGAGATAACGGTTTGGCGTGATGGAATGGAATACATGCAAACATATTCTCGTGGAAAGCCAGTGACAATTCTGAAATGCCTTGTGCTTCCAGATGGAAGGAAAGATCTTCGAGGGACACGTGTCAGATTTTGGCCTGACAAAGAAGTATTCACCACTGCTATTGCGTTTGATTACAACACAATAGCTGGACGCATTAGGGAGTTAGCTTTCCTCAACCCAAAGCTTACAATCACGCTTCGGAAAGAGGACAATGATCCAGAAAAAGTTCAATGTAACGAATATTTCTATGCCGGGGGATTGGTTGAATATGTGAAGTGGCTTAACACTGATAAGAAAGCTCTTCACGATGTTCTGAGTTTTAGAAAAGAAACAGATGGCATCACAATTGATATAGCTTTTCAATGGTGTGAAGATGCATATTCAGATACAATACTGGGATATGCTAATAGTATACGCACTATTGATGGTGGCACTCATATTGATGGTATGAAGGCTTCTATAACGAGAACGCTGAATAATCTTGGAAAGAAGTCAAAAGTTATTAAGGATAAGGATATTACCCTAAGTGGCGAGCATGTGAGAGAGGGTCTAACATGTGTTGTCTCAGTCAAGGTCCCAAATCCTGAGTTTGAAGGACAAACAAGGTTAGGAAATCCAGAGGTGCGAAAAGTGGTTGATCAATCTATTCAAGACTATCTTACTGAGTATTTAGAATTGCATCCAGATGTTCTTGATTCAGTGCTTTCTAAAGCTCTTAATGCTTTTAAGGCAGCTCTGGCTGCAAAAAGAGCAAGGGAATTGGTTAGACAAAAGAGTGTATTGAGATCTTCATCTCTTCCGGGAAAACTAGCTGATTGTTCATCTACGAATCCTGAAGAATGTGAAATCTTTATAGTTGAAGGTGATTCAGCTGGAGGAAGCGCTAAGCAAGGGCGTGACAGGCGCTTTCAGGCCATTCTACCTCTGAGGGGTAAGATTCTGAATATTGAAAGGAGGGATGAAGCAGCAATGTACAAAAATGAAGAGATCCAAAATTTGATTCTTGGTCTTGGTCTTGGAGTGAAGGGAGAGGATTTTAAAAAGGACGCACTCcgatatcataaaattattattttgactgATGCTGATGTGGATGGTGCCCACATCCGAACTCTGCTACTGACATTTTTCTTCAGATATCAGCATTTGTTTGATGAAGGTTGCATATATGTTGGTGTTCCACCATTGTACAAGGTTGTAAGGGGAAAACAAGTGCACTATTGCTATGATGATGCTGACCTTAAGAAGCTTCAAAGGTCATTCCCTCCTAATGCATCATACAACATGCAAAGGTTCAAAGGGTTGGGAGAGATGATGCCTTTACAACTATGGGAAACAACCATGGATCCAGAACGCAGGTTATTGAAGCAATTAAAAGTTGAGGATGCAGCAGAAGCAAATATTGTTTTTTCCTCTCTTATGGGTGCTCGGGTGGATGTTCGGAAGGAACTCATACGAAATTCTGCAAGCATGATTGATCTTGATCAGCTAGATATTTGA 2145 0.4228 MAHVLLLRPPLLRLMTSRFFTSSSFHTRFSSFPPSTLSKTRTTFPLRKFWVPCSVPNAVTPRAFMSSVSTTEAFQKNQSSTAYSSDQIQVLEGLDPVRKRPGMYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLLADDSVSITGQWSRVTNKSALETVLTVLHAGGKFGGAHSGYSVSGGLHGVGLSVVNALSELLEITVWRDGMEYMQTYSRGKPVTILKCLVLPDGRKDLRGTRVRFWPDKEVFTTAIAFDYNTIAGRIRELAFLNPKLTITLRKEDNDPEKVQCNEYFYAGGLVEYVKWLNTDKKALHDVLSFRKETDGITIDIAFQWCEDAYSDTILGYANSIRTIDGGTHIDGMKASITRTLNNLGKKSKVIKDKDITLSGEHVREGLTCVVSVKVPNPEFEGQTRLGNPEVRKVVDQSIQDYLTEYLELHPDVLDSVLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSTNPEECEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFFRYQHLFDEGCIYVGVPPLYKVVRGKQVHYCYDDADLKKLQRSFPPNASYNMQRFKGLGEMMPLQLWETTMDPERRLLKQLKVEDAAEANIVFSSLMGARVDVRKELIRNSASMIDLDQLDI 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1575 714 SUPERFAMILY Ribosomal protein S5 domain 2-like 301 469 IPR020568 -
Ssu4g1575 714 PANTHER DNA GYRASE/TOPOISOMERASE SUBUNIT B 57 714 - -
Ssu4g1575 714 ProSitePatterns DNA topoisomerase II signature. 500 508 IPR018522 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Ssu4g1575 714 SMART topII5 112 705 IPR001241 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Ssu4g1575 714 PANTHER DNA GYRASE SUBUNIT B 57 714 - -
Ssu4g1575 714 Gene3D - 79 299 IPR036890 -
Ssu4g1575 714 CDD TopoII_Trans_DNA_gyrase 300 452 - -
Ssu4g1575 714 ProSiteProfiles Toprim domain profile. 496 610 IPR006171 -
Ssu4g1575 714 CDD TOPRIM_TopoIIA_GyrB 496 609 IPR034160 -
Ssu4g1575 714 SMART HKATPase_4 108 251 IPR003594 -
Ssu4g1575 714 PRINTS DNA topoisomerase II family signature 185 199 - -
Ssu4g1575 714 PRINTS DNA topoisomerase II family signature 112 127 - -
Ssu4g1575 714 PRINTS DNA topoisomerase II family signature 348 361 - -
Ssu4g1575 714 PRINTS DNA topoisomerase II family signature 583 600 - -
Ssu4g1575 714 PRINTS DNA topoisomerase II family signature 644 660 - -
Ssu4g1575 714 PRINTS DNA topoisomerase II family signature 565 581 - -
Ssu4g1575 714 PRINTS DNA topoisomerase II family signature 498 512 - -
Ssu4g1575 714 SUPERFAMILY Type II DNA topoisomerase 473 704 IPR013760 GO:0003918|GO:0005524
Ssu4g1575 714 Gene3D - 300 476 IPR014721 -
Ssu4g1575 714 Pfam DNA gyrase B subunit, carboxyl terminus 640 700 IPR002288 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Ssu4g1575 714 PRINTS DNA gyrase subunit B signature 452 472 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Ssu4g1575 714 PRINTS DNA gyrase subunit B signature 438 452 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Ssu4g1575 714 PRINTS DNA gyrase subunit B signature 665 677 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Ssu4g1575 714 PRINTS DNA gyrase subunit B signature 300 322 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Ssu4g1575 714 PRINTS DNA gyrase subunit B signature 548 557 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Ssu4g1575 714 PRINTS DNA gyrase subunit B signature 272 285 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Ssu4g1575 714 PRINTS DNA gyrase subunit B signature 681 697 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Ssu4g1575 714 PRINTS DNA gyrase subunit B signature 83 93 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Ssu4g1575 714 PRINTS DNA gyrase subunit B signature 257 272 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Ssu4g1575 714 PRINTS DNA gyrase subunit B signature 392 408 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Ssu4g1575 714 Gene3D - 477 714 IPR013759 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Ssu4g1575 714 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 83 290 IPR036890 -
Ssu4g1575 714 CDD HATPase_GyrB-like 113 291 - -
Ssu4g1575 714 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 110 250 IPR003594 -
Ssu4g1575 714 Pfam Toprim domain 497 595 IPR006171 -
Ssu4g1575 714 Pfam DNA gyrase B 301 468 IPR013506 GO:0003677|GO:0003918|GO:0005524|GO:0006265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1575 K02470 - gmx:100807172 1273.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1575 4 26999270 27017102 Ssu4g1575 4 26999270 27017102 ECH