Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1563 ATGATTCCTATGGATACTTTGCTCAAAACACCTAACAAGCTTGAGTTTTTGCACCCACTTCACGGTTACTCAGAAAAATTGAGCAATTCAGGATCTTCTAGGGCGCAAAATCAGGAGCTTAGGTTTGGTTCCAAGAAACCACTTGTGAGATGGGGTAAATGTGGGAGTTTGAGGGCTAGTAGCAGTGCCCTTTTGGAGCTTGTTCCTGAGTTTAAGAAGGAGAATCTGGATTTTGAACTTCCTTTGTATGATTCCTCAAAGGGGGCTGTGGTGGACCTTGCAGTTGTGGGAGGGGGCCCTGCAGGGCTTGCAGTTGCACAGCAGGTTTCTGAGGCAGGGCTTTCAGTTTGTGCCATTGATCCAAACCCTAGATTGATTTGGCCCAATAATTATGGTGTTTGGGTGGATGAGTTTGAGGCCATGGATTTGCTTGATTGCCTTGACACCACTTGGTCCGGCGCCGTTGTCTACGTCGACGATAAAACGAAGAAGGATCTAGATAGACCTTATGGTAGGGTCAATAGGAAGCTGCTGAAGTCGAAGATGCTGCAGAAATGCATATCGAATGGTGTCAGGTTTCACCAAGCCAAAGTTATCAAGGTTATTCATGAGGATGCCAAATCTTTGCTGATTTGTAATGATGGTGTCACTGTTCAGGCTACTGTGGTTCTTGATGCAACTGGCTTTTCAAGATGCCTTGTTCAGTATGATAAACCGTATAATCCGGGTTACCAAGTTGCGTATGGGATTTTGGCCGAGGTTGATGAACACCCGTTTGATGTAGATAAAATGCTTTTTATGGACTGGAGAGATTCACATCTGGACAATGACATGGAGCTGAAGCAGAGAAATAGTAGGATACCCACCTTTCTATATGCAATGCCCTTTTCATCCACTAAGATATTTCTTGAAGAAACTTCTCTTGTTGCACGCCCTGGGTTACGAATGGATGATATACAGGAAAGAATGGTTGCTAGGTTGAAACACTTGGGTATTAAAGTGAAAAGCATTGAAGAGGATGAGCATTGTGTCATTCCCATGGGTGGCCCCCTCCCAGTTCTCCCCCAAAGAGTTGTTGGCATTGGCGGTACCGCTGGGATGGTGCATCCTTCAACTGGGTATATGGTAGCAAGGACCCTGGCTGCAGCTCCTATTGTTGCTAATTCTATTGTTCAGTGCCTTGGTTCTGATAGAGGTCTTTCAGGAGGTGAACTATCTGCACAAGTTTGGAAAGATTTATGGCCCATCCAAAGGCGGCGGCAAAGGGAGTTCTTCTGTTTTGGTATGGACATCTTACTCAAGCTTGATTTACCAGGCACAAGGAGATTTTTTGATGCGTTTTTTGATCTGGAACCTCATTACTGGCATGGATTCTTATCATCAAGACTGTTTCTTCCTGAGCTCATATTTTTTGgattctctctattttcttatGCTTCTAATACATCTAGGATAGAGATTATGGCAAAGGGAACTCTTCCTTTGGTAAACATGATCAACAACTTGGTAAAAGATACAGAATAA 1524 0.4357 MIPMDTLLKTPNKLEFLHPLHGYSEKLSNSGSSRAQNQELRFGSKKPLVRWGKCGSLRASSSALLELVPEFKKENLDFELPLYDSSKGAVVDLAVVGGGPAGLAVAQQVSEAGLSVCAIDPNPRLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVYVDDKTKKDLDRPYGRVNRKLLKSKMLQKCISNGVRFHQAKVIKVIHEDAKSLLICNDGVTVQATVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVDEHPFDVDKMLFMDWRDSHLDNDMELKQRNSRIPTFLYAMPFSSTKIFLEETSLVARPGLRMDDIQERMVARLKHLGIKVKSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANSIVQCLGSDRGLSGGELSAQVWKDLWPIQRRRQREFFCFGMDILLKLDLPGTRRFFDAFFDLEPHYWHGFLSSRLFLPELIFFGFSLFSYASNTSRIEIMAKGTLPLVNMINNLVKDTE 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1563 507 Pfam Lycopene cyclase protein 92 484 - -
Ssu4g1563 507 PANTHER UBIQUINONE BIOSYNTHESIS MONOOXYGENASE COQ6, MITOCHONDRIAL 9 507 - -
Ssu4g1563 507 Gene3D - 89 429 IPR036188 -
Ssu4g1563 507 SUPERFAMILY FAD/NAD(P)-binding domain 91 475 IPR036188 -
Ssu4g1563 507 TIGRFAM carotene-cycl: lycopene cyclase family protein 92 487 IPR010108 GO:0016117|GO:0016705
Ssu4g1563 507 PANTHER LYCOPENE BETA CYCLASE, CHLOROPLASTIC 9 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1563 Ssu-Chr4 26646617 26648140 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1563 K06443 - gmx:100810895 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1563 4 26646617 26648140 Ssu4g1563 4 26646617 26648140 ECH