Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1558 ATGAGGTTGTCATGGGCTCTTGTACATTCAAGGCAAAAGGAAGATGTTCAGCGCGGGATAGCCATGCTTGAAACTTCTTTGGGCAATGATAGAAGTCCTTTGCATCAAAGAGAGAAGCTTTATCTTGTGGCTGTTGGTTACTATAGAAGTAATGACTATGCAAGGAGCCGACAGCTTGTGGAGCAATGTTTGGAGATTGCACCTGATTGGAGGCAGGCACTGTCCCTCAAGAAAATAGTTGAAGATCGAATTGCTAAAGATGGTGTAATAGGAATTGGCATCACTGCAACAGCTGTGGGACTTATAGTTGGTGGCATTGCTGCCGCATTGGCCCGGAGGAATTGA 345 0.4551 MRLSWALVHSRQKEDVQRGIAMLETSLGNDRSPLHQREKLYLVAVGYYRSNDYARSRQLVEQCLEIAPDWRQALSLKKIVEDRIAKDGVIGIGITATAVGLIVGGIAAALARRN 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1558 114 CDD Fis1 1 88 IPR033745 -
Ssu4g1558 114 SUPERFAMILY TPR-like 1 113 IPR011990 GO:0005515
Ssu4g1558 114 Pfam Fis1 N-terminal tetratricopeptide repeat 1 27 IPR028058 -
Ssu4g1558 114 Pfam Fis1 C-terminal tetratricopeptide repeat 37 89 IPR028061 -
Ssu4g1558 114 PANTHER MITOCHONDRIAL FISSION 1 PROTEIN B 1 113 - -
Ssu4g1558 114 Gene3D Tetratricopeptide repeat domain 1 113 IPR011990 GO:0005515
Ssu4g1558 114 PIRSF TPR_repeat_11_Fis1 1 113 IPR016543 GO:0000266
Ssu4g1558 114 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11 1 113 IPR016543 GO:0000266
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1558 Ssu-Chr4 26616136 26618376 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1558 K17969 - gmx:100785425 205.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1558 4 26616136 26618376 Ssu4g1558 4 26616136 26618376 ECH