Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1557 atggaagAGAATGGATTACCAGGATTGGAGTGGGTGAGAGTGGGAGAAGGAGAAGTTCGAGGGTGTTTGAGTAAGTTCGTGGATGATGGCAGCACCGAGAGTCACAGATACTACTTGTCTCGCAGAACCACTCTGGAAATGCTCAGAGACAGAGGCTACTCCGTACCCTCTCACGAAATCgacctctctctctctgaatTCCGCGAAATGCACGGCCAGTCTCCCGACCCCGACCGCCTCCGCCTCTCCCTCACTCACGCCACTAACCCTTCCAAAAGGGTATCCATTCCCACGCAACGCGTTTCTCTCTCTGCTTCGGTTTTGGTGATTTTCTGTGGGACAGGTGTCGTGAAAGTGACTGACATTCGGAACATTGCGGGGCAGATTGTTAATAGAGACACTTTGACTGGCCTGATATTGATAGTGCAGAATCATATTACTAGCCAGGCCTTGAAAGCGGTCAATCTTTTCTCCTTCAAGGTTGAAATTTTCCAGATCACAGACTTGCTTGTTAATATTACAAAGCATGTATTGAAGCCAAAGCATCAGGTGCTGACTGATCGGCAGAAGCAAAATCTCCTGAAGAAGTACAATATCGAAGAAAAGCAGCTTCCCCGTATGCTACAGACAGATGCAATTGCACGATATTATGGACTTGAGAGGGGCCAAGTAGTTAAAGTTACCTATAGTGGTGAAATCACCCAGATGCATGTCACGTATCGATGTGTTTGGTGA 735 0.4585 MEENGLPGLEWVRVGEGEVRGCLSKFVDDGSTESHRYYLSRRTTLEMLRDRGYSVPSHEIDLSLSEFREMHGQSPDPDRLRLSLTHATNPSKRVSIPTQRVSLSASVLVIFCGTGVVKVTDIRNIAGQIVNRDTLTGLILIVQNHITSQALKAVNLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDRQKQNLLKKYNIEEKQLPRMLQTDAIARYYGLERGQVVKVTYSGEITQMHVTYRCVW 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1557 244 Gene3D - 169 244 IPR035913 -
Ssu4g1557 244 PANTHER DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A 16 244 - -
Ssu4g1557 244 SUPERFAMILY Eukaryotic RPB5 N-terminal domain 32 172 IPR036710 GO:0003677|GO:0003899|GO:0006351
Ssu4g1557 244 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 16 244 IPR014381 -
Ssu4g1557 244 PIRSF RPB5 26 244 IPR014381 -
Ssu4g1557 244 Gene3D - 27 168 IPR036710 GO:0003677|GO:0003899|GO:0006351
Ssu4g1557 244 Pfam RNA polymerase Rpb5, N-terminal domain 32 128 IPR005571 GO:0003677|GO:0003899|GO:0006351
Ssu4g1557 244 Pfam RNA polymerase Rpb5, C-terminal domain 171 243 IPR000783 GO:0003677|GO:0003899|GO:0006351
Ssu4g1557 244 SUPERFAMILY RPB5-like RNA polymerase subunit 169 244 IPR035913 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1557 Ssu-Chr4 26610912 26614486 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1557 K03013 - gmx:100306033 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1557 4 26610912 26614486 Ssu4g1557 4 26610912 26614486 ECH