Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1555 ATGTTTTCTTCTGCAATCTCTCTGAAGCCTTCGCTTCAGTCCCTCCTCCTCGATCGTTGCGCTCAGAGCACAACTGCTGCAACCAGGTGGGAGTGCTTGGGGTTTAACAAGTCAGAAAATTTCAGTACCAAGAGAGTGTTGTGTACTGAGGGGTTCAAGCTGAATTGCTTGGTTGATAGTAGAGAGATGGATGTGgagtcatcatcatcatctttggTGGATGATGCTGCCACGTGCTTAAGTGAAGAGGAGTTAGGGGAGCCTAGCatttcaacaatggtgatgaaTTTCGAGAATAAGTTTGATCCTTTTGGAGCAATTAGTTCCCCACTTTACCAAACTGCTACTTTTAAGCAGCCTTCTGCAATAGAAAACGGTCCCTATGACTATACCAGAAGTGGAAATCCTACTCGAGATGCTTTAGAAAGTTTACTGGCTAAACTTGATAAAGCAGATAGAGCCCTATGCTTCACCAGCGGAATGGCTGCTTTGTCTGCGGTTGTTCATCTTGTTGGAACtgGTGAGGAAATTGTTGCGGGGGATGATATATATGGTGGCTCAGATAGGTTGCTGTCTCAAGTAGTTCCAAGGACTGGAGTTGTGGTGAAACGGGTAAATACAAGTGATCTAAATGAGGTTGCATCCGCCATTGGACCCAGGACCAAGCTTGTGTGGCTTGAGAGTCCAACCAATCCTCGGCTACAAATTTCTGATATTCGAAAAATAGCAGAGATGGGTCATTCACATGGTGCTCTTGTGTTAGTGGACAATAGTATAATGTCACCTGTGTTGTCCTGGCCATTGGAACTTGGAGCAGATATTGTCATGCACTCAGCTACAAAATTTATTGCTGGACATAGTGACATTATGGCTGGTGTGCTTGCTGTGAAAGGTGAAAGGTTGGGAAAGGAATTGTATTTCTTGCAAAACGCAGAGGGTTCAGGCCTAGCTCCATTTGATTGTTGGCTTTGTTTGCGAGGAATCAAGACAATGACCCTGCGAATTGAAAAGCAACAGGATAATGCACAGAAGATTGCTGAGTTCCTTGCCTCCCATCCTCGAGTGAAGAAAGTGAATTATGCTGGTTTGCCTGGTCATCCTGGTCGCGATTTACACTATTCTCAGGCAAAGGGTGCAGGATCTGTGCTTAGCTTTTTGACTGGTTCACTGGCACTTTCAAAGCATATTGTTGAAACTACCAAATACTTCAGCATAACTGTCAGCTTTGGGAGTGTGAAGTCCCTTATCAGCATGCCTTGCTTTATGTCACATGCTAGCATACCTGCTGCAGTTCGTGATGCCAGAGGTTTAACTGAAGATCTTGTGCGTGTATCTGTGGGGATTGAGGATGTGAATGATCTCATTGCTGATCTAGACAATGCACTTAGAACTGGgcctctttaa 1404 0.4323 MFSSAISLKPSLQSLLLDRCAQSTTAATRWECLGFNKSENFSTKRVLCTEGFKLNCLVDSREMDVESSSSSLVDDAATCLSEEELGEPSISTMVMNFENKFDPFGAISSPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALSAVVHLVGTGEEIVAGDDIYGGSDRLLSQVVPRTGVVVKRVNTSDLNEVASAIGPRTKLVWLESPTNPRLQISDIRKIAEMGHSHGALVLVDNSIMSPVLSWPLELGADIVMHSATKFIAGHSDIMAGVLAVKGERLGKELYFLQNAEGSGLAPFDCWLCLRGIKTMTLRIEKQQDNAQKIAEFLASHPRVKKVNYAGLPGHPGRDLHYSQAKGAGSVLSFLTGSLALSKHIVETTKYFSITVSFGSVKSLISMPCFMSHASIPAAVRDARGLTEDLVRVSVGIEDVNDLIADLDNALRTGPL 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1555 467 TIGRFAM cysta_beta_ly_E: cystathionine beta-lyase 91 464 IPR006238 GO:0004121|GO:0071266
Ssu4g1555 467 PANTHER TRANS-SULFURATION ENZYME FAMILY MEMBER 32 467 IPR000277 GO:0019346|GO:0030170
Ssu4g1555 467 Pfam Cys/Met metabolism PLP-dependent enzyme 92 462 IPR000277 GO:0019346|GO:0030170
Ssu4g1555 467 Gene3D - 89 331 IPR015421 GO:0003824
Ssu4g1555 467 SUPERFAMILY PLP-dependent transferases 98 463 IPR015424 -
Ssu4g1555 467 PANTHER BNAC04G24570D PROTEIN 32 467 - -
Ssu4g1555 467 Gene3D Aspartate Aminotransferase, domain 1 332 465 IPR015422 GO:0003824
Ssu4g1555 467 ProSitePatterns Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 273 287 IPR000277 GO:0019346|GO:0030170
Ssu4g1555 467 CDD CGS_like 105 463 IPR000277 GO:0019346|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1555 Ssu-Chr4 26576157 26583113 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1555 K01760 - gmx:100812354 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1555 4 26576157 26583113 Ssu4g1555 4 26576157 26583113 ECH