Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1554 ATGTCAAGTGGATCCGTGAGACGGGTTTCCCGTCAAGATATTCAGCTGGTGCAAAATCTCATAGAACGATGTCTACAACTATATATGAGCCAGAAAGAAGTTGTGGAAACACTACTTGCTCAAGCAAAAATAGAGCCTGGTTTCACCGAACTagTTTGGCAAAAgcttgaagaagaaaatgaagagttCTTCAAGGCTTACTATGCAAGATTGGTTTTGAAGCAGCAAATATTGCAATTCAACAAATTGCTGGATCAGCAAGTGCAATTAATGCAGTTACACTCAAGTGCTGTTGCATCACTACCTGCGTCTAATGGGTCACATATCCCTGCAGTTTCATCACTGCCTAACTCTAATGGGTCACATATCCCTGCAATACCTGAGAATCCAGCATGCTACACTACAGATCGAACCCAAACAAGTTTGAAGCCAGAAAATATGCAACATCCCATTGATTCCAGATTATCTAATGTGTTTAATAATGGTGGGTCATCACTACATACAAGTATGCATGCTGCAGTTGATATGTCTGCTCATGGCAATAGGATTAATGGCCCTCCAAGCATGCTTTCTGCTAAAAGCGCAAACATGGGTCTGATCCAAGGAATCAATGGTGGGATGATCAAATCTGAACCTGGATATTCTGGTTGTTCTCCTTACATATTTGGTGCTGATGGAAATGTCCTGGAGGCACGCCCAACTATTGGTGGTGCTTCTGTTACGTCATTCGCCAATGTCGAGTCCAACTCACATTCTCTGAACGAGGCAGTCCTAGATCCAGACACTTCTTCATTTGGATTTTTGGGGCAGATTCCCAGAAATTTTAGCCTTTCAGATCTGACTGCTGATTTTTCTCAGAGTTCCGATATACTGGAGAGCTATTCTAGGTCACCCTTCCTAGCTGCGGATAATGAGAACTTCCTTGACAGAGGAGAACAAGACAACAATAGGCTGGACTCCATATCAGAAGGCTTAAGTTATGAAGACTTTGGGAGTGAATAG 1002 0.4172 MSSGSVRRVSRQDIQLVQNLIERCLQLYMSQKEVVETLLAQAKIEPGFTELVWQKLEEENEEFFKAYYARLVLKQQILQFNKLLDQQVQLMQLHSSAVASLPASNGSHIPAVSSLPNSNGSHIPAIPENPACYTTDRTQTSLKPENMQHPIDSRLSNVFNNGGSSLHTSMHAAVDMSAHGNRINGPPSMLSAKSANMGLIQGINGGMIKSEPGYSGCSPYIFGADGNVLEARPTIGGASVTSFANVESNSHSLNEAVLDPDTSSFGFLGQIPRNFSLSDLTADFSQSSDILESYSRSPFLAADNENFLDRGEQDNNRLDSISEGLSYEDFGSE 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1554 333 PANTHER OS02G0137100 PROTEIN 1 327 - -
Ssu4g1554 333 Pfam Plant protein 1589 of unknown function (A_thal_3526) 17 69 IPR006476 -
Ssu4g1554 333 PANTHER OS02G0137100 PROTEIN 1 327 IPR006476 -
Ssu4g1554 333 TIGRFAM A_thal_3526: uncharacterized plant-specific domain TIGR01589 14 69 IPR006476 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1554 Ssu-Chr4 26550189 26556080 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1554 - - gmx:100787548 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1554 4 26550189 26556080 Ssu4g1554 4 26550189 26556080 ECH