Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1552 ATGGACAAAGAAACAGAGCGCAACACACTCTCGTTCGTTCGTTCGATTTTGACTTGCACTTGCACAGTTCCACGTTTGCAATTGCGAACCAGTTTTGCTATGAACTCAGGTATCATTGCAGGTGCAGCGTTGCTTGCACTCTTGGCTATAACCTTTGCCTTGTTCAACCCACAAACCCTTTTTTCGCCGCCTAATGTTCCTGGATCGAAGGATCACCTTCACGCTGCTAGGATACTCCACGTCACCGGAGCCGTCGGACCGGAGAGTCTGGTTTTCGACGGTGACGGCGGAGGACCCTACACCAGCGTCGCCGATGGCCGGATTCTGAAGTGGGAAGGGGAGGAACGAGGTTGGACTGAATTTGCTGTCACCAGTTCCAATAGGTCGGACTGTGTACGTCCATTTGCACCAGAGTTGGAGCACATTTGTGGGAGGCCATTAggactaaaatttgataagaaaAGTGGAGACCTGTACATTGCTGATGCCTACCTAGGCCTAAAAGTAGTGGGACCTACAGGGGGTTTGGCCACCGAAGTGGTAACAGAAGCCGAAGGTCAGCCCTTGTACTTCACCAATGACATGGACATCAGTGAAGATGAAGATGTGATCTACTTCACCGATTCAAGCACAAACTTCCAGAGAAGGCAATTTATGCTTGTACTCCTTAGTGGTGACAAGACCGGCCGGTTCATGAAATATGACAAGTCAACAAAAGAAGTGACAGTCTTATTACGCGGCCTTGCTTTTCCCAATGGTGTTGCTTTAAGCAAAGATGGCTCATTTGTTCTGGTAGCAGAAACCACTACTTGCAGGATCTTGCAGTTTTGGCTTCATGGACCTAAGGCTGGTCAAGTGGAAACTTTTGCAGTTGTGCCTGGTTTTCCGGACAATGTTAGAAGAAATTCAGAAGGGCAGTTCTGGGTAGCTCTGCATGCAAAGGGAAGTCCTTTTGCAAAGTGGGTTTCTTCCAATCCGTGGGCAGGAAAGGCATTGCTAAAGCTTGGATTTAACTTCAAGCAGTTGCACTCATCATTTGCAGGTTGGAAGCCTCATGCTGTTGCTGTAAAGCTAAGTGATAAAGGAGAGATATTAGAAGTCTTGGAAGATTGTGAAGGGAAGACCTTAAAGTTCATCAGTGAAGTGGAAGAGAAAGATGGGAAACTTTGGCTTGCATCAGTGTTGATGCCTTTCATTGGCATTTATGATTTATGA 1215 0.465 MDKETERNTLSFVRSILTCTCTVPRLQLRTSFAMNSGIIAGAALLALLAITFALFNPQTLFSPPNVPGSKDHLHAARILHVTGAVGPESLVFDGDGGGPYTSVADGRILKWEGEERGWTEFAVTSSNRSDCVRPFAPELEHICGRPLGLKFDKKSGDLYIADAYLGLKVVGPTGGLATEVVTEAEGQPLYFTNDMDISEDEDVIYFTDSSTNFQRRQFMLVLLSGDKTGRFMKYDKSTKEVTVLLRGLAFPNGVALSKDGSFVLVAETTTCRILQFWLHGPKAGQVETFAVVPGFPDNVRRNSEGQFWVALHAKGSPFAKWVSSNPWAGKALLKLGFNFKQLHSSFAGWKPHAVAVKLSDKGEILEVLEDCEGKTLKFISEVEEKDGKLWLASVLMPFIGIYDL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1552 404 Pfam Strictosidine synthase-like, N-terminal 71 111 - -
Ssu4g1552 404 Pfam Strictosidine synthase 193 280 IPR018119 GO:0009058|GO:0016844
Ssu4g1552 404 PANTHER PROTEIN STRICTOSIDINE SYNTHASE-LIKE 10 35 402 - -
Ssu4g1552 404 Gene3D - 70 404 IPR011042 -
Ssu4g1552 404 SUPERFAMILY Calcium-dependent phosphotriesterase 51 403 - -
Ssu4g1552 404 PANTHER STRICTOSIDINE SYNTHASE-RELATED 35 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1552 Ssu-Chr4 26470719 26473931 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1552 - - gmx:100815025 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1552 4 26470719 26473931 Ssu4g1552 4 26470719 26473931 ECH