Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1550 ATGAACATGGCTCCAATTTCCACCAGGATTCTCGGTTCGACGTCGTCGCGAGCCGCGGCTGCGCTCCGCCACTGGCGGTGGTACTCCTCCGCCTCCGCGGCGGTGGCGGAACCGGAGAGCACGGAGGTTAAGGACTACGCCGATTACCGGCGGTCCCTGTACGGACAGATCACGCACAAGGCCCTCCTCGTCGACGCCGTTGGCACCCTCGTCCTCCCTTCCCAGCCCATGGCTCAGATATATAGGAAGATTGGGGAGAAGTATGGGGTGGAGTACTCGGAGGACGAGATACTGTACAGATACAGAAGAGCGTACGGTCAGCCTTGGGGCAAATCTCGTCTCAGATATGTTAATGATGGTAGGCCCTTTTGGCAATACATAGTTAGTTATTCTACCGGTTGTTCAGATCCTCAATACTTTGAAGAACTTTATAACTATTACATGACAGACAAGGCATGGCACCTCAATGATCCTCGTGCAGAAGAAGTATTCAGAGCTCTTAGAAAATCAGGGGTGAAATTAGCTGTTGTGTCAAATTTTGACACTAGATTAAGACCTCTCCTGCGGGCATTAGATTGTGACAATTGGTTTGATGCAGTAGCAGTGTCAGCTGAGGTTGCAGCGGAGAAACCAAATCCAACTATATTTCTCAAAGCATGTGAACTATTGGATGTAAAACCTGAGGATGCTGTTCATGTTGGGGATGACCGCAGAAATGATATATGGGGTGCCAGGGATGCAGGCTGTGATGCTTGGCTTTGGGGAAGCGATGTTCATTCCTTTAAGGAGGTAGCAAAGAGGATTGGGGTTCAGGTCTGA 819 0.5031 MNMAPISTRILGSTSSRAAAALRHWRWYSSASAAVAEPESTEVKDYADYRRSLYGQITHKALLVDAVGTLVLPSQPMAQIYRKIGEKYGVEYSEDEILYRYRRAYGQPWGKSRLRYVNDGRPFWQYIVSYSTGCSDPQYFEELYNYYMTDKAWHLNDPRAEEVFRALRKSGVKLAVVSNFDTRLRPLLRALDCDNWFDAVAVSAEVAAEKPNPTIFLKACELLDVKPEDAVHVGDDRRNDIWGARDAGCDAWLWGSDVHSFKEVAKRIGVQV 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1550 272 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN 15 272 - -
Ssu4g1550 272 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 149 250 IPR006439 -
Ssu4g1550 272 Gene3D - 75 148 IPR044924 -
Ssu4g1550 272 SFLD Haloacid Dehalogenase 60 254 - -
Ssu4g1550 272 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 60 254 - -
Ssu4g1550 272 Gene3D - 64 256 IPR023214 -
Ssu4g1550 272 CDD HAD_dREG-2_like 160 271 - -
Ssu4g1550 272 PANTHER - 15 272 - -
Ssu4g1550 272 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 167 248 IPR006439 -
Ssu4g1550 272 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 60 253 IPR011949 -
Ssu4g1550 272 SUPERFAMILY HAD-like 60 262 IPR036412 -
Ssu4g1550 272 Pfam Haloacid dehalogenase-like hydrolase 68 251 IPR041492 -
Ssu4g1550 272 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 59 70 IPR006439 -
Ssu4g1550 272 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 215 235 IPR006439 -
Ssu4g1550 272 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 167 180 IPR006439 -
Ssu4g1550 272 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 197 213 IPR006439 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1550 Ssu-Chr4 26436707 26440907 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1550 - - gmx:100789672 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1550 4 26436707 26440907 Ssu4g1550 4 26436707 26440907 ECH