Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1545 ATGAAGCTCATTAGCATCAACCCCAAGACCCTCAAACTCAGCCCCAAACGCCTCTTCCGCTCCAAAAAGGAACGCTCCGCGGTCTCCCGCTCCGACCCGCCCTCCTTCGGGTCCGGATCCTCATCCGAGGACTCCACCCACAAGCCCGGCGCCGCCCCCGGCTCCCAGACCCCCACCAGCGTCCTCCCCGACCGCTCCGGCGACTGGTCCGACGCCGTCGCCGACCTCCGGTGGGACCTCGCCCAGGCCTTCCGCCTCATCGACCGCGACAACGACGGCGTCGTCTCGCGCCAGGACCTCGAGGCCGTCCTCACCAGCCTCGGCGCGCCCGACGTCGCCACCATGCTCAGCGAGGTGGACGGCGACGGCGGCCCCATCACCGTCGAAGCCCTCATGAGCCGGGTCGGGTCGGGTCTCGAGTCCGGTTCGGATCCGGGCGAACTGAGAGAGGCGTTCGAGGTGTTCGACACGGATCGCGACGGGAGGATCTCGGCGGAGGAGCTGCTTAGGGTTTTCAAAGCGATCGGCGACGAGCGGTGCACGCTAGACGAGTGCCGGCGCATGATAGAAGGCGTGGACAGGAGCGGGGACGGGTTCGTCTGCTTCGAGGACTTCTCCCGGATGATGGAGTTGCAGCAGCGGTGA 645 0.676 MKLISINPKTLKLSPKRLFRSKKERSAVSRSDPPSFGSGSSSEDSTHKPGAAPGSQTPTSVLPDRSGDWSDAVADLRWDLAQAFRLIDRDNDGVVSRQDLEAVLTSLGAPDVATMLSEVDGDGGPITVEALMSRVGSGLESGSDPGELREAFEVFDTDRDGRISAEELLRVFKAIGDERCTLDECRRMIEGVDRSGDGFVCFEDFSRMMELQQR 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1545 214 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 7 211 - -
Ssu4g1545 214 Gene3D - 139 214 - -
Ssu4g1545 214 Gene3D - 71 132 - -
Ssu4g1545 214 ProSiteProfiles EF-hand calcium-binding domain profile. 143 178 IPR002048 GO:0005509
Ssu4g1545 214 ProSiteProfiles EF-hand calcium-binding domain profile. 180 214 IPR002048 GO:0005509
Ssu4g1545 214 ProSiteProfiles EF-hand calcium-binding domain profile. 79 110 IPR002048 GO:0005509
Ssu4g1545 214 CDD EFh 147 209 IPR002048 GO:0005509
Ssu4g1545 214 PANTHER CALCIUM-BINDING PROTEIN CML35-RELATED 7 211 - -
Ssu4g1545 214 SMART efh_1 147 175 IPR002048 GO:0005509
Ssu4g1545 214 SMART efh_1 79 107 IPR002048 GO:0005509
Ssu4g1545 214 SMART efh_1 184 212 IPR002048 GO:0005509
Ssu4g1545 214 CDD EFh 79 173 IPR002048 GO:0005509
Ssu4g1545 214 MobiDBLite consensus disorder prediction 31 64 - -
Ssu4g1545 214 ProSitePatterns EF-hand calcium-binding domain. 156 168 IPR018247 -
Ssu4g1545 214 SUPERFAMILY EF-hand 79 211 IPR011992 -
Ssu4g1545 214 ProSitePatterns EF-hand calcium-binding domain. 88 100 IPR018247 -
Ssu4g1545 214 MobiDBLite consensus disorder prediction 15 66 - -
Ssu4g1545 214 Pfam EF-hand domain 80 108 IPR002048 GO:0005509
Ssu4g1545 214 Pfam EF-hand domain pair 147 209 IPR002048 GO:0005509
Ssu4g1545 214 ProSitePatterns EF-hand calcium-binding domain. 193 205 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1545 Ssu-Chr4 26269877 26270521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1545 9 213 EF-hand Containing Proteins AT3G10190 52.294 2.67e-57 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1545 K13448 - gmx:100815559 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1545 4 26269877 26270521 Ssu4g1545 4 26269877 26270521 ECH