Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1544 ATGGATCAAATTAGTAATGAGGCTAGTGTTGACCGTTTTCCAATTGGTCCTTCAGACATTCTCGGTAGGACAATTGCTTTCAGGGTTCTTTTCTGCAAGTCAATGTCACATTTTAGGCACCAGATATTTCTTGTGTTGCTAGAACTCTTCTATCGGTTTAGGGGGGTTTTGGCATCCTTTATATCATGGTTGCATCCCAGGAACCCTCAAGGGATATTGGCAATGATGACAATTGTTGCTTTCTTGTTGAAACGATACACAAATGTGAAAGTAAGGGCTGAAATGGCATATAGGAGGAAGTTTTGGAGAAACATGATGAGGACTGCTTTGACCTATGAGGAGTGGGCTCATGCAGCTAAGATGCTTGATAAGGAGACAacaaagatgaatgaatcagACCTTTATGATGTGGAATTGATGAGGAACAAGCTTCAAGAGCTCCGCCACCGTCGGCAAGAGGGATCTCTTagagatataatattttatatgcgTGCCGATCTTGTTAGAAATTTAGGTAATATGTGTAACCCTGAACTACACAAGGGTAGGCTTCAGGTGCCCAAACTAATCAAGGAGTACATTGAGGAGGTGACGACTCAATTGAGAATGGTCTGTGACTCTGATTCAGAGGAGCTGTCATTGGAAGAAAAGCTTGCTTTCATGCATGAAACTAGGCATGCTTTTGGGAGGACAGCTTTGCTGTTAAGTGGGGGTGCTTCACTTGGAGCTTCTCATGTGGGTGTAGTTAAAACACTGGTAGAACATAAACTCTTGCCTAGGATAATTGCTGGTTCAAGTGTGGGATCCATTATGTGTGCTGTTGTTGCCACTAGGACTTGGCCTGAGCTTCAGAGCTTTTTTGAGGATTCATGGCACTCATTGCAATTTTTTGATCAAATGGGTGGGATTTTTGCGGTTGTTAAGAGAGTCACAACATTTGGTGCTGTTCATGAGATCAGACATTTGCAAATGATGTTGAGGCATCTAACAAGCAACCTTACATTTCAAGAAGCTTATGACATGACAGGCAGAATTCTTGGGATTACAGTTTGTTCCCCAAGGAAGCATGAACCACCTAGATGTCTTAACTACTTGACTTCACCCCATGTGGTTATATGGAGCGCAGTCACCGCTTCTTGTGCCTTTCCTGGCCTTTTTGAGGCTCAAGAATTGATGGCAAAGGATAGAAGTGGAGAGATTGTTCCTTACCATCCTCCTTTTAACTTAGGTCCTGAAGAGGGCTCCACACCAGTGCGCCGTTGGAGGGATGGTAGCTTGGAGATTGATTTACCTATGATGCAGTTGAAAGAACTATTCAATGTCAATCATTTTATAGTTAGCCAGGCCAACCCTCATATTGCACCATTATTGAGATTGAAAGAATTTGTGCGGACGTACGGGGGCAACTTTGCTGCCAAGcTTGCTCATCTTGTGGAGATGGAGGTGAAACATAGGTGTAATCAAATACTGGAACTTGGCTTTCCATTAGGTGGACTTGCTAAATTGTTTGCTCAAGACTGGGAAGGTGATGTGACTGTTGTTATGCCTGCAACCCTTGCTCAGTACTCCAAAATTATACAGAATCCTTCTTATGGAGAGCTTCAAAAGGCAGCCAACCAAGGGAGAAGGTGCACTTGGGAGAAACTTTCGGCCATAAAAGCGAATTGTGGCATTGAACTTGCTCTTGATGAGTGTGTTGTAATGCTCAATCATATGAGAAGACTAAAGAGAATTGCTGACAGAGCTGCTTCTGCTTCTCATGGTTTGTCGAGTACTATCAAGTTCAGTGCTTCAAAAAGAATTCCTTCATGGAATTGCATTGCGCGAGAGAATTCGACAGGCTCCCTTGAAGACCTTACTGATGTTGCTTCCTCATTGCATCAAGGCATTAGTGGTTCCAATGGAGCTAATGGTAAAACTTGGAAGACCCACCGTGGCATACACGACGGAAGTGACAGTGACTCTGAAAGTGTTGATTTGAATTCTTGGACAAGATCTGGAGGGCCTTTGATGAGAACTACTTCGGCAAATATGTTCATCGATTTTCTCCAAAACTTGGACATTGATACCGAACCAAATAAAGGCTTGGTGAGTCATACTAACCCTCATGATTTTCAGTATCGTAGTCCCAGGCTCACAACACCAGATAGGAACTCTGACAGCACAGAATCTGAGCTAAGGGAAATTGGCGACAGGGTTGTCAATGGGTCCAGCTTACTGGTGGCTGAAGGTGATCTTTTGCAGCCTGAAAGGATCCATAATGGTATTGTGTTTAATGTTGTCAAGAAAGACTTGACACCCTTAAATAGGAGCCATGATTCTGAAAATTACAACAATCAAGTTGCTGAATGTGTCCAAGATGAGTGTCCAGGGAAGGAGATGGATGCTGCTAGCTCAGCTTCTGAGTATGGAGATGATGAATCCATACTAGCTAGGTCCTTAACTGAAACTCCAGACTACAATTCCATGGATCATCATTCGGGCGCAGATTCGGGTATGGATAAGAGCATTGTTGACAGTTAG 2523 0.4277 MDQISNEASVDRFPIGPSDILGRTIAFRVLFCKSMSHFRHQIFLVLLELFYRFRGVLASFISWLHPRNPQGILAMMTIVAFLLKRYTNVKVRAEMAYRRKFWRNMMRTALTYEEWAHAAKMLDKETTKMNESDLYDVELMRNKLQELRHRRQEGSLRDIIFYMRADLVRNLGNMCNPELHKGRLQVPKLIKEYIEEVTTQLRMVCDSDSEELSLEEKLAFMHETRHAFGRTALLLSGGASLGASHVGVVKTLVEHKLLPRIIAGSSVGSIMCAVVATRTWPELQSFFEDSWHSLQFFDQMGGIFAVVKRVTTFGAVHEIRHLQMMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQELMAKDRSGEIVPYHPPFNLGPEEGSTPVRRWRDGSLEIDLPMMQLKELFNVNHFIVSQANPHIAPLLRLKEFVRTYGGNFAAKLAHLVEMEVKHRCNQILELGFPLGGLAKLFAQDWEGDVTVVMPATLAQYSKIIQNPSYGELQKAANQGRRCTWEKLSAIKANCGIELALDECVVMLNHMRRLKRIADRAASASHGLSSTIKFSASKRIPSWNCIARENSTGSLEDLTDVASSLHQGISGSNGANGKTWKTHRGIHDGSDSDSESVDLNSWTRSGGPLMRTTSANMFIDFLQNLDIDTEPNKGLVSHTNPHDFQYRSPRLTTPDRNSDSTESELREIGDRVVNGSSLLVAEGDLLQPERIHNGIVFNVVKKDLTPLNRSHDSENYNNQVAECVQDECPGKEMDAASSASEYGDDESILARSLTETPDYNSMDHHSGADSGMDKSIVDS 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1544 840 MobiDBLite consensus disorder prediction 693 726 - -
Ssu4g1544 840 Gene3D Cytosolic phospholipase A2 catalytic domain 229 308 - -
Ssu4g1544 840 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 233 436 IPR002641 GO:0006629
Ssu4g1544 840 Pfam Domain of unknown function (DUF3336) 95 226 IPR021771 GO:0004806|GO:0006629
Ssu4g1544 840 Gene3D Cytosolic phospholipase A2 catalytic domain 309 494 - -
Ssu4g1544 840 MobiDBLite consensus disorder prediction 694 717 - -
Ssu4g1544 840 PANTHER NEUROPATHY TARGET ESTERASE/SWISS CHEESE D.MELANOGASTER 1 714 - -
Ssu4g1544 840 SUPERFAMILY FabD/lysophospholipase-like 229 575 IPR016035 -
Ssu4g1544 840 MobiDBLite consensus disorder prediction 791 840 - -
Ssu4g1544 840 PANTHER TRIACYLGLYCEROL LIPASE-RELATED 1 714 - -
Ssu4g1544 840 Pfam Patatin-like phospholipase 233 424 IPR002641 GO:0006629
Ssu4g1544 840 CDD Pat_SDP1-like 163 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1544 Ssu-Chr4 26229119 26233029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1544 4 798 Acyl Lipid Metabolism Gene Families AT5G04040 74.381 0.0 1203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1544 K14674 - gmx:100791261 1551.95