Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1542 ATGGCTCAATTGCTATCATCTTCTTGCTCCTTGACTATCTGCTCTAGAAATAAACCTTACTTAAAATCTCTTAACCAATGTTCAACACCATTTTCTACTGCGGTTGCTTGCAATAATTCCAAACCTCCATTTAGAAGGCTTTTCTTGCAAGAACAGAAGCCAAGAAAAGGTTCTGTAGTGGTACATGCTGCTGCAGTTTCAACTAGCCAGGAAACCCCAGTTCAAACTAGCTTTGGTGACCCTTTTAAACCACAGCGAGTCATGGTCATTGGTGGAGATGGATACTGTGGTTGGGCAACTGCTCTCCACCTTTCTAACAAGGGTTATGAGGTTGCCATTGTTGACAGCCTTGTTCGACGCCTTTTTGATCACCAGCTTGGACTGGATTCTCTGACACCAATTTTGTCAATCCAGAATCGCCTTCTCCATTGGAAATCTCTCACTGGAAAAAATATTGAGCTCTACATTGGTGACATATGTGATTTTGAGTTCTTATCTGAAAGCTTCAAGTCATTTGAACCTGATGCTGTTGTCCACTTTGGGGAACAGCGATCTGCTCCTTACTCTATGATAGATCGGTCAAGAGCTGTGTATACCCAGCAAAACAATGTTATTGGGACACTGAATGTGCTCTTTGCCATAAAAGAGTTCAGAGAACAGTGTCATTTAGTTAAGCTTGGGACCATGGGTGAATATGGGACTCCAAATATTGATATCGAGGAAGGTTATATTACCATAACACACAATGGAAGGACAGACACTTTGCCATATCCCAAGCAAGCTAGCTCATTCTATCATCTAAGCAAGGTACATGATTCACATAACATAGCTTTCACTTGCAAAGCTTGGGGGATTCGAGCCACTGATCTGAATCAAGGAGTGGTATATGGGGTAAGAACAGATGAGACTGCAATGCATGAAGAGCTGTATAACAGGTTTGATTACGATGGAATATTTGGAACTGCATTGAATCGGTTCTGTGTTCAGGCTGCTGTTGGTCATCCACTTACTGTATATGGTAAAGGAGGCCAGACTAGGGGCTTCCTTGACATAAGAGATACAGTTCAATGTGTTGAGCTTGCCATCGCAAACCCCGCGAAGCCTGGGGAGTTCCGAGTCTTCAATCAATTCACTGAGCAGTTTTCAGTCAATCAACTTGCCAACCTTGTTACAAAAGCTGGTGAGAAGCTGGGCCTTGATGTGAAAACTATCAATGTGCCTAACCCGAGAGTTGAGGCAGAAGAGCATTACTACAATTGCAAGAACACCAAACTAGTTGATCTGGGACTGAGACCACACTTTCTTTCAGATTCTCTACTTGATTCACTGCTTAACTTTGCTATTCAGTACAAAGATCGTGTtgacacaaaacaaattatgcCTAGTGTGTCTTGGAAAAAAATTGGGGTCAAAACAAAAACTGTTACAGCCTGA 1434 0.4184 MAQLLSSSCSLTICSRNKPYLKSLNQCSTPFSTAVACNNSKPPFRRLFLQEQKPRKGSVVVHAAAVSTSQETPVQTSFGDPFKPQRVMVIGGDGYCGWATALHLSNKGYEVAIVDSLVRRLFDHQLGLDSLTPILSIQNRLLHWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVYTQQNNVIGTLNVLFAIKEFREQCHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELYNRFDYDGIFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVQCVELAIANPAKPGEFRVFNQFTEQFSVNQLANLVTKAGEKLGLDVKTINVPNPRVEAEEHYYNCKNTKLVDLGLRPHFLSDSLLDSLLNFAIQYKDRVDTKQIMPSVSWKKIGVKTKTVTA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1542 477 PANTHER BNAA03G52320D PROTEIN 61 475 - -
Ssu4g1542 477 Pfam NAD dependent epimerase/dehydratase family 87 374 IPR001509 -
Ssu4g1542 477 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 61 475 - -
Ssu4g1542 477 Gene3D - 293 454 - -
Ssu4g1542 477 Gene3D - 86 377 - -
Ssu4g1542 477 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 85 457 IPR036291 -
Ssu4g1542 477 CDD SQD1_like_SDR_e 86 466 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1542 1 476 Acyl Lipid Metabolism Gene Families AT4G33030 78.586 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1542 K06118 - gmx:100805019 899.042